Agra013053.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000032.1:1103678-1106408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.3e-06 0.00025 21.9 1.0 1 23 198 220 198 220 0.97 2 17 0.0041 0.31 12.2 5.0 2 23 241 263 240 263 0.96 3 17 1.8 1.4e+02 3.8 2.5 2 23 269 291 268 291 0.91 4 17 0.00071 0.055 14.6 2.9 1 23 297 319 297 319 0.97 5 17 0.00011 0.0086 17.1 5.5 1 23 325 347 325 347 0.98 6 17 0.00023 0.017 16.1 5.8 1 23 353 375 353 375 0.98 7 17 0.0038 0.29 12.3 4.2 2 23 382 403 381 404 0.95 8 17 0.065 5 8.4 1.9 1 20 410 429 410 432 0.94 9 17 0.00054 0.042 14.9 1.1 2 23 439 460 438 460 0.96 10 17 4.2e-05 0.0033 18.4 1.6 2 23 468 489 468 489 0.98 11 17 0.022 1.7 9.8 0.5 1 23 495 517 495 517 0.92 12 17 1.6e-06 0.00012 22.9 2.2 1 23 523 545 523 545 0.97 13 17 3.8e-06 0.00029 21.7 1.9 1 23 551 573 551 573 0.98 14 17 9.4e-06 0.00073 20.5 4.8 1 23 579 601 579 601 0.96 15 17 0.00052 0.04 15.0 0.6 2 23 608 629 607 629 0.97 16 17 0.0013 0.1 13.7 1.2 2 23 636 657 635 657 0.96 17 17 4.4e-07 3.4e-05 24.6 5.8 1 23 663 685 663 685 0.98
Sequence Information
- Coding Sequence
- ATGAATTGTCGCCTCTGTCTATGTTTTGCACCAGCTGAATCCTCTATTTCAATATACGACGACAATGACTCGTTACTGGAACTCGTCCGAAGCTGCTGTCAGCTTAAAGTGCAAAAAAATGATACACTGCCAGATTCGATATGCGTGACATGCAAATCGAAAGTGCTCTTGTTCGCCAATTTCAAACAAAACTGTACACGCCACGATAAAACTGTGAGATTAAGATTGTCACAATGCGAGCCAAAAGTTGTAACTGCTGGTTCAATTTGGGTGAATGCGACTATTGATGATGATGAGGATGATGAAAGACTAACAGATAATGGAGGTAAAATATCGAGCGTCGTTGATACTACGTCTTGCGGAGATACCACCAATATTAAAGTGGAAGAAGTAAATTTGGAAGATCTAGTGTGGGAGAATGAGAATTTCGGTTCCAATCCATTACCGTATAGTCTGCCACCAATTGGTGATAGTGGTcttaaaaatctaaataatCACAACTCACAAAACAGTGGCCAAGGAAAAAAGATTACTTCAAGTGTATCTCCAGCACAGAATAGTTTCAACAATCCGCATTCCAGCATATCTATATTCGAATGTGACTACTGTGGAGAATCATTTGATGATAAATTTCATTTGATATCGCACATTGTGAAACACTTCAAGAGTAAACCACACAATGAGCTGTTGAAAGAACGTCCCGTCGGAAACAAACTAAACCAATGCAAGATGTGTTTCAAACAATTTAAGAGCAAACAAACATTGAGGAcgcattttatgaaatttcacattgagaaaaaactgaaatgtaaaCCGTGCCGAAAAGAATTCAAAACAATAATAACATTAGAAATACACAATTCGAAATGCCACTCTGATAAAACACTACACAAGTGCAAAATATGCTCAGAAGCGTTTGAATCCAAGTTGTCATTACAAACACACACCAAACAACACACTGaaaaaatactacataaatGCAAAACATGTTCAAAAGAGCTAAAAACGAAATCGTCATTGCAATTACATATGAAACGACACACCGATAAAACACTGCACAAATGCAAAACATGTTCGAAAGAATTCAAAACGGAAACAACACTAAAAGCACACACGAAACGCCACACCGAGAGAAACTTACAAAAGTGCGAAATCTGCTCGAAGGAGCTCAGCTCGAAATTCAGATTGAAGACGCACATGAAATATCATCACACTGAGAAAAAAATACACCAGTGCCAAATCTGTCCGGAAAAGTTCCAAGCAAAGCTTGCACTGAATCAGCACATGATCTGTCACACCGGCAAAAAGATTCTCAAGTGCGGCATCTGCCTCAAAGAGTTCAATACCAGATTCACATTCAAAGCCCACATGGAATATCACTACGCTGGAGACAAACTACCCCAGTGTGAAGTATGCTCGAAGCAGTTCAGCTCCAAGTTCTCGGTGAGATCTCACATGAGAATCCACACTGGAGAAAAACTGCATGTATGCGAAATCTGCTCCAAAGGCTTCCTCTCAAACGGAGCGTTGAACAACCACAGGGTCTTTCACGGCGGGAAACGATCACACGAATGCGAAATATGTTCAAAGCGTTTCATATCGTTGTCTAATTTGAAGCAGCACATGATGTATCACACCGGAGGTAAGCCGCACCAGTGCAACGTGTGCTTGAAGAGGTTCGTGACGAGGAGCAATCTGAACGAACACGTCCGGATACACACTGGGGTGAAACCTCACGCTTGTGAAACATGCTCAAAGTGTTTCATAAGAAGCAAAGACTTGAAGCGGCACATGGCGACGCACTCGGGAGACAAACCGAACAAGTGTGAGTTGTGTTCGAAGGGTTTCGCCACCGACTATATGCTGAAGCGACACGTGATGCAACACACGGGAGAAAAGTCTATGATGTGCGAAATTTGCTCAAAGTGCTTCCTCACAGCTGGCGAATTGAACCAGCATTTGAAGTATCACACCAGCAAGAGGCCGCACGAATGTAGAAAATGTGGCAAATGTTTTGTAACAGTGAGCAATTTGAAACAGCATATGAGAACTCACATTGGGGAACAGTTTCAAGATTTTAATTGA
- Protein Sequence
- MNCRLCLCFAPAESSISIYDDNDSLLELVRSCCQLKVQKNDTLPDSICVTCKSKVLLFANFKQNCTRHDKTVRLRLSQCEPKVVTAGSIWVNATIDDDEDDERLTDNGGKISSVVDTTSCGDTTNIKVEEVNLEDLVWENENFGSNPLPYSLPPIGDSGLKNLNNHNSQNSGQGKKITSSVSPAQNSFNNPHSSISIFECDYCGESFDDKFHLISHIVKHFKSKPHNELLKERPVGNKLNQCKMCFKQFKSKQTLRTHFMKFHIEKKLKCKPCRKEFKTIITLEIHNSKCHSDKTLHKCKICSEAFESKLSLQTHTKQHTEKILHKCKTCSKELKTKSSLQLHMKRHTDKTLHKCKTCSKEFKTETTLKAHTKRHTERNLQKCEICSKELSSKFRLKTHMKYHHTEKKIHQCQICPEKFQAKLALNQHMICHTGKKILKCGICLKEFNTRFTFKAHMEYHYAGDKLPQCEVCSKQFSSKFSVRSHMRIHTGEKLHVCEICSKGFLSNGALNNHRVFHGGKRSHECEICSKRFISLSNLKQHMMYHTGGKPHQCNVCLKRFVTRSNLNEHVRIHTGVKPHACETCSKCFIRSKDLKRHMATHSGDKPNKCELCSKGFATDYMLKRHVMQHTGEKSMMCEICSKCFLTAGELNQHLKYHTSKRPHECRKCGKCFVTVSNLKQHMRTHIGEQFQDFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -