Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000028.1:5346782-5348713[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.6e-06 0.00036 21.4 1.0 2 23 169 190 168 190 0.95

2 14 5.7e-05 0.0044 18.0 0.5 1 23 196 218 196 218 0.99

3 14 4.3e-05 0.0033 18.4 1.4 1 23 224 246 224 246 0.99

4 14 1.4e-05 0.0011 19.9 3.6 1 23 252 274 252 274 0.99

5 14 0.00024 0.019 16.0 4.4 1 23 280 303 280 303 0.97

6 14 0.00096 0.074 14.1 5.9 1 23 307 329 307 329 0.98

7 14 9.4e-05 0.0072 17.3 2.4 1 23 336 358 336 358 0.98

8 14 4.4e-05 0.0034 18.4 2.5 1 23 364 386 364 386 0.98

9 14 1.7e-06 0.00013 22.8 0.4 1 23 403 425 403 425 0.98

10 14 2.1e-05 0.0016 19.4 2.0 1 23 431 453 431 453 0.98

11 14 8.2e-05 0.0064 17.5 4.0 1 23 459 481 459 481 0.98

12 14 0.00016 0.012 16.6 3.1 2 21 490 509 489 511 0.94

13 14 0.0077 0.6 11.3 3.3 1 21 517 537 517 539 0.96

14 14 5.4e-05 0.0042 18.1 0.6 1 20 546 565 546 566 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.6e-06	0.00036	21.4	1.0	2	23	169	190	168	190	0.95
2	14	5.7e-05	0.0044	18.0	0.5	1	23	196	218	196	218	0.99
3	14	4.3e-05	0.0033	18.4	1.4	1	23	224	246	224	246	0.99
4	14	1.4e-05	0.0011	19.9	3.6	1	23	252	274	252	274	0.99
5	14	0.00024	0.019	16.0	4.4	1	23	280	303	280	303	0.97
6	14	0.00096	0.074	14.1	5.9	1	23	307	329	307	329	0.98
7	14	9.4e-05	0.0072	17.3	2.4	1	23	336	358	336	358	0.98
8	14	4.4e-05	0.0034	18.4	2.5	1	23	364	386	364	386	0.98
9	14	1.7e-06	0.00013	22.8	0.4	1	23	403	425	403	425	0.98
10	14	2.1e-05	0.0016	19.4	2.0	1	23	431	453	431	453	0.98
11	14	8.2e-05	0.0064	17.5	4.0	1	23	459	481	459	481	0.98
12	14	0.00016	0.012	16.6	3.1	2	21	490	509	489	511	0.94
13	14	0.0077	0.6	11.3	3.3	1	21	517	537	517	539	0.96
14	14	5.4e-05	0.0042	18.1	0.6	1	20	546	565	546	566	0.95

Sequence Information

Coding Sequence: atgatggagTGTAGACTTTGTCTCTGTTCTACTCCAGCTGCATCTTCCACCCACATCTATGACAATCCAGAGTCATTAGTTCAACATATTAAAACTAGCTGTCGGCTACAAGTTGAAAGGGATGATGGGTTGCCAAGTATTATATGTCACCCATGTGAAAATAATCTGAGGTTGTTGAGCGATTTTAGAaacatttgtataaataatGAAGAAATGCAGAAACTGAAGTTGGTCgaatatgtgtgtattaaaaCGGAAGAAATTATGCTGGAcgatatgaaatatgaaaatgagGATATTGAATCGGAAGCCAACATTCTAGAAGAAAGCGATCCACTGttaCACAAAGGAAAAGCTTCATCATGCGATAGCATGAAAGATACTGAACTTCCAACTGAAAATGTATATGCAAACAAATCTGAACGGAACCATAACAATAGTCAGAAATCATTTCTTGATGGAACTAATTTAGTTAAAAATTCTCGAAGTAAGGAAAAGCTGTTGATATGTGATCTTTGTTCAAAGTCATTTCGTTACAAATCTTCTCTCATACGTCATATCAATTTTCACTACGGTATTAAACCGTACCAATGCGAAATctgcttaaaatcattcacaATCGAAGCCTTTCTCAGAGAACACATGAAATCTCACCCTGGCGTTAAACTGTACAAATGTAACCTTTGTCTAAAATCGCTTACCACTAAAATTAGCTTGAAAGAACACATGAATTCTCACAACGACACGAATCCATACAAATGTTCAATCTGTGTAAAATCGTTTAAATCTCAAAGCTATTATTATAAACACGTCAAATCACACACCGaagtaaaaccacacaaatgtgacacttGTTCGAAATCGTTCTTTTTTCAATACACACTTGCGAAGCATATAAATTCTCAGCATGAGATAAAACACGAATGTGACATCTGCTTAAAGTCATTTTCTTCGAAGTCTTACTGCTTGAAACACATGCAGACTCACACTGCAGTGAGAGAATCACAcacatgtgacatttgtttaaaatctttcaTCACTAAAACTACCTTTGTGGAACACATGAATTCTCACAACGGGATAAAACTGCACCGTTGTGAAATCTGCTCGGAATCGTTTGCCTCTAAATACTTTCTCGGCAAACATATGAAATCTCACGCCGGATTGTCTCACGTCGGTTCGAAACTTCTATCTAGGATAAAATCATACGTTTGCGAACTCTGCTCAAAGTCATTCACATCTAAACCTTCGCTAGTGGAGCATATGAACTCGCACAACGGTATAAAGCCGTATAAATGCGTAATTTGCTCACTATCGTTCACTCATAAGAGCAGCCTCGGCAAACATGTGAAAATTCACACTGGGAAAAGACCGCACCAGTGTCACATTTGCTTGAAAACTTTCATCACAAAACCTAGACTCGTCCAACATATGAATACTCACGTCAAGATAAAATCATCCGCTTTGAATTGCAAAGTTTGCGCAAAATCTTTCGCTAACAAGTACACTCTTACGAACCACATGAGATGTCACACCGGAGAGACACCTTACAAGTGCAATATCTGTTTAAAAGAATTTGCCTTCAAATCTAACATCGTATATCATATGAAATGTCACGATAGAGTGAAAGAAATGCACAAATGTGAGATCTGCTTAAAATCGTTCACTAACAAATCCGAGCTTGCCGAACACACTAGCGATGGAATTTGTAAAGAAAAGCAAAATTTACGAGAAGTTAAATATGTAGTGCAATGTTTGGACAAGTCTGGACCTGTCTAA
Protein Sequence: MMECRLCLCSTPAASSTHIYDNPESLVQHIKTSCRLQVERDDGLPSIICHPCENNLRLLSDFRNICINNEEMQKLKLVEYVCIKTEEIMLDDMKYENEDIESEANILEESDPLLHKGKASSCDSMKDTELPTENVYANKSERNHNNSQKSFLDGTNLVKNSRSKEKLLICDLCSKSFRYKSSLIRHINFHYGIKPYQCEICLKSFTIEAFLREHMKSHPGVKLYKCNLCLKSLTTKISLKEHMNSHNDTNPYKCSICVKSFKSQSYYYKHVKSHTEVKPHKCDTCSKSFFFQYTLAKHINSQHEIKHECDICLKSFSSKSYCLKHMQTHTAVRESHTCDICLKSFITKTTFVEHMNSHNGIKLHRCEICSESFASKYFLGKHMKSHAGLSHVGSKLLSRIKSYVCELCSKSFTSKPSLVEHMNSHNGIKPYKCVICSLSFTHKSSLGKHVKIHTGKRPHQCHICLKTFITKPRLVQHMNTHVKIKSSALNCKVCAKSFANKYTLTNHMRCHTGETPYKCNICLKEFAFKSNIVYHMKCHDRVKEMHKCEICLKSFTNKSELAEHTSDGICKEKQNLREVKYVVQCLDKSGPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -