Agra000807.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000003.1:10638243-10640093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.9e-06 0.0003 21.7 0.7 1 23 173 195 173 195 0.97 2 12 0.0052 0.4 11.8 3.9 1 23 202 225 202 225 0.96 3 12 0.00013 0.0099 16.9 1.7 1 23 295 317 295 317 0.98 4 12 1.9e-06 0.00014 22.7 2.1 1 23 328 350 328 350 0.98 5 12 4.8e-06 0.00037 21.4 1.7 2 23 357 378 356 378 0.97 6 12 3.5e-05 0.0027 18.7 4.0 1 23 384 406 384 406 0.98 7 12 2.6e-07 2e-05 25.3 0.9 1 23 412 434 412 434 0.96 8 12 0.00073 0.057 14.5 0.3 1 23 440 462 440 462 0.97 9 12 4.9e-07 3.8e-05 24.5 0.5 1 23 468 490 468 490 0.98 10 12 0.00036 0.028 15.5 0.6 1 23 496 518 496 518 0.98 11 12 4.4e-07 3.4e-05 24.7 1.7 1 23 524 546 524 546 0.98 12 12 2.2e-05 0.0017 19.3 0.2 1 23 552 574 552 575 0.95
Sequence Information
- Coding Sequence
- ATGGAGATCGTGCAGGCGGGGCGCGTGTGTCGCGTGTGCATGGCCGAGCCGCAGCCGCAGCAGGCCGTCTCGCTCGAGGAGGACACCTGCGCGCTGCTGCGGCTCGTGGCTTCCGTGCGCGTCTCGCCCGGCGACGGCCTGCCGCAGCAGCTGTGCGCGGAGTGCGCGCTCCGTCTCGACGCCGCAGTCGACTTCAGACGCCAGTGCGAGCACACCGACCGCCTCCTGCACCAGCTCCTGCTCCCCCtgcccctccccctccccctgaCCCTCACCCACGATGACGTCAAGCACGAGCTGCCGGCGATCGCGCACTACGACGCGGCCGACGTGGACGTCAGCGTGGATCTGGACGTCAACGTCGACCACCACGACTACGACGACGACTTCTTCATGTTCAAGGTGGAGCCGGAGACGCAGCTGCACGACGGACAGCTCAAGGCGGACGCGCTGGTCAAGCAGGAGGCGGAGGCGGAAGTGGAGGCGCCCTCGGAGCCCGCCAAGAGGTTCAAGCCGTTCGCCTGCTCGCTCTGCCGCAAGTCGTACTCCAACGCCAAGTCGCTGCGGCGGCACATGGCGGTGCACGAAGGTGGAAGCGAGGAGTTCAAGTGCGAGTGCTGCGGGCGCGGGTTCGGTCGCCGCGACCACCTCGACAAGCACCGGCTGCGCGCGCACGGCGACCGGGCGACGCGGCCCGTGCTCGAGCTGGTGTCTCCGGGCGAGTCGAGCGCAGACGACAACGacaacgacgacgacgacgatgacgacgacaACTCGACGAGCAAGACGGTGGGGAGGGTGACGACGAGCGGCGGGGGCGCCGTGGCCACCATCAAGGAGGAGCAGCGCGACGGCGACACTCGACTCATCCTGCGGGTCATGTACAAGTGCACCATCTGCGACATCCAGTACGACAACCAGCACTCGTACGCCGCGCACATGACCAAGCACTCGGGTCCCCTGCCCAAGGGGCAGACGCACTTCTCCTGCACGCTCTGCAACAAAGTGTTCGCCAAGAGGAAGAATCTGAAACAGCACCTGCTGACGCACAACGAGGAGAAGGCGAACAAGTGCACCCTGTGCCATCGGGCGTTCACCCGACCCGACCAGTTGATCCTGCACATGAACAATCACACGGGCAAAAAGAGACACCAGTGCGTGCACTGCGACAAGGGTTTCAACATGCTCTCCACGTTGAAAGACCACCTGAGAACGCACAGTGGCGAAAAACCGTACCTGTGTTCCATATGCGGAAAGGGATTCTCTCAAAACACCAACTTGAAACAGCACTTGATGAGACACTCGGCCATAAAGCCTTTCGACTGTCTCACCTGCCAGGCGAAATTCGTGTCCAAGGGTGAACTCGACGCACACTTGAGAAAGCACACGGGAGAACATCCCTTCGTCTGCGACACCTGCGGGACGGGATTCACCACGTCGAGCTCTTTAGTTAAACATAGAAGAATTCATTCCGGAGAGAGGCCATACGCTTGCGATCTGTGTTCCCTTCGTTTCACGGCTCTCGGGACGCTGAAAAATCACCGCCGCACGCACACGGGAGAAAAGCCGTTCGAGTGCTCGCACTGTGGAAGAGCCTTCACACAAAAGAGCGACATGGTATCGCATGTGAGGACGCACACGGGCGAAAAACCATACATTTGTTCAGCCTGCGGCGCGCCTTTCCAACAGTCTTCGGCACTGAAAGCTCACATTAAGACGCATCACCCTCAACTGAAAAAACCACCTATGCTCCTGACATCGTTGGAAACTATAACTTTGACTGCAGCGATGACCGTCGAACAGACGGAGCATTTGGTTAATATGTCTAAAAACGAATTTGTggaaaattaa
- Protein Sequence
- MEIVQAGRVCRVCMAEPQPQQAVSLEEDTCALLRLVASVRVSPGDGLPQQLCAECALRLDAAVDFRRQCEHTDRLLHQLLLPLPLPLPLTLTHDDVKHELPAIAHYDAADVDVSVDLDVNVDHHDYDDDFFMFKVEPETQLHDGQLKADALVKQEAEAEVEAPSEPAKRFKPFACSLCRKSYSNAKSLRRHMAVHEGGSEEFKCECCGRGFGRRDHLDKHRLRAHGDRATRPVLELVSPGESSADDNDNDDDDDDDDNSTSKTVGRVTTSGGGAVATIKEEQRDGDTRLILRVMYKCTICDIQYDNQHSYAAHMTKHSGPLPKGQTHFSCTLCNKVFAKRKNLKQHLLTHNEEKANKCTLCHRAFTRPDQLILHMNNHTGKKRHQCVHCDKGFNMLSTLKDHLRTHSGEKPYLCSICGKGFSQNTNLKQHLMRHSAIKPFDCLTCQAKFVSKGELDAHLRKHTGEHPFVCDTCGTGFTTSSSLVKHRRIHSGERPYACDLCSLRFTALGTLKNHRRTHTGEKPFECSHCGRAFTQKSDMVSHVRTHTGEKPYICSACGAPFQQSSALKAHIKTHHPQLKKPPMLLTSLETITLTAAMTVEQTEHLVNMSKNEFVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -