Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000013.1:12302133-12307143[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.2e-06 9.1e-05 23.3 2.6 1 23 182 204 182 204 0.97

2 13 4.4e-06 0.00034 21.5 1.2 1 23 213 235 213 235 0.97

3 13 0.0069 0.54 11.4 0.1 1 23 242 264 242 264 0.97

4 13 3.6e-06 0.00028 21.8 0.8 1 23 283 305 283 305 0.99

5 13 1.1e-06 8.7e-05 23.4 1.1 1 23 314 336 314 336 0.97

6 13 4.7e-06 0.00037 21.4 3.1 1 23 342 364 342 364 0.98

7 13 1.5e-06 0.00011 23.0 2.6 3 23 372 392 371 392 0.98

8 13 1.4e-06 0.00011 23.1 0.8 1 23 398 420 398 420 0.96

9 13 0.0027 0.21 12.7 2.6 1 23 426 448 426 448 0.93

10 13 1.7e-05 0.0013 19.7 1.4 1 23 454 476 454 476 0.98

11 13 0.022 1.7 9.8 8.0 1 23 482 504 482 504 0.98

12 13 7.3e-07 5.6e-05 24.0 1.8 1 23 510 532 510 532 0.99

13 13 0.00029 0.022 15.8 0.5 1 20 538 557 538 560 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.2e-06	9.1e-05	23.3	2.6	1	23	182	204	182	204	0.97
2	13	4.4e-06	0.00034	21.5	1.2	1	23	213	235	213	235	0.97
3	13	0.0069	0.54	11.4	0.1	1	23	242	264	242	264	0.97
4	13	3.6e-06	0.00028	21.8	0.8	1	23	283	305	283	305	0.99
5	13	1.1e-06	8.7e-05	23.4	1.1	1	23	314	336	314	336	0.97
6	13	4.7e-06	0.00037	21.4	3.1	1	23	342	364	342	364	0.98
7	13	1.5e-06	0.00011	23.0	2.6	3	23	372	392	371	392	0.98
8	13	1.4e-06	0.00011	23.1	0.8	1	23	398	420	398	420	0.96
9	13	0.0027	0.21	12.7	2.6	1	23	426	448	426	448	0.93
10	13	1.7e-05	0.0013	19.7	1.4	1	23	454	476	454	476	0.98
11	13	0.022	1.7	9.8	8.0	1	23	482	504	482	504	0.98
12	13	7.3e-07	5.6e-05	24.0	1.8	1	23	510	532	510	532	0.99
13	13	0.00029	0.022	15.8	0.5	1	20	538	557	538	560	0.94

Sequence Information

Coding Sequence: ATGAGGATGGGGGCGAGCGGCTCCGGCGATCCCGAGGGCGGGGGCGCCGAGTGCGGGGGCGGAGGGGTCGGGGGCGGAGGCGCCGGCACTCTGCTGGAGAGCATGTGTCGGGGCTGCATGCGTGAGGAGTCGCCGCTCGTCGACCTCTTCGCGGGCACCGACGACGCCACCTTCGCGGCCACCCTCACCCTCACCCTCGCCGACCTCTTCATGCTCTGTGCTCCCGTTCAGgtatTGAAAGAAGATGGTCTACCTCAGAAAGTGTGCGAAACCTGTATCGAGAGTCTATCGGCAGCGTACGCTTTTCGCAGCCAGTGCGAAAGAAATGATTCGATGCTTCGAAACATACTGAAGAATCAAACCATTCCAGATCCCGCCGTTCAAATCAAACAAGAGCCCGACGTCGATTCGATGCTCGACGTCAAACAGGAATACGACGACTTCGACGACAACTTCGtcaacgacgacgacgacgacgacgtctCGTCGCACCACGAGTCGAGGAAAAAACGCAAACTGAGAAAACTGCGTGTCAAAGGCGGTCATATGTGCAACGAATGCGGCAAGTCGTTCTACAAAGCGTCGAGACTGATGAGGCACATGAAAATCCACGTGAAGGTCAAGAAGGAGTCGCCGCACTCGTGCGAAGTTTGCAAAAAGACATTCGTGAAACTGTCGGGACTGACGCGGCACATGGCGATCCACGACTCGGAAGCGAAACCCTTCGAGTGCGCCAGCTGTCTGCAGCGGTTCAAGAGGGAAGGTTTATTATTGAGGCACGTGGCGATTCACACCACCGGCATAGACGCGCAAATGGTCGATAATAAAGAGGACGCTATGCAAAAGTATCAATGTGAGGACTGCGAGGCGGTCTTTGAGTCGAGACACTCGCTGTCCAGTCACATGAGAATACACAAAGAGAAAGCGAAAGAGAAGCATTACGCTTGCACAGTGTGCGATAAGAAATTCTCGTCGAAAAATCCGCTCAATAGACATATGAAATTGCACGCGGAGAATAAACCTCACAAGTGCACCCTGTGCGATAAGCGTTATTCAAGGCAAGACCAACTTTTAGACCACATTAATAAACATAACGGTGTGAAACCAAATATTTGTCCATTTTGTAATAAAGCATTTTCGCAATTGTGCAATTTGAAAGACCACATGCGTACCCATACCGGTGAAACGCCGTATTTGTGCTCTCAATGTGGCAAAGGCTTCAACAACGGTTCTAATTTGAGACAACATATGATGAGGCATACAGGCCTGAAACCGTACTCGTGCAATCTTTGTCCGAAACGATTTTCAACAAAAgGTCAGATGACGTGTCATGTTGGAACTCATACCGGAGCTCACCCGTATGTTTGCGATACGTGTGGACACGCCTTTACAAAACCAAACTCGTTAAAAAAACATAAACTCATTCACCTCGGAGTGAAACCGCACGAATGTGATGTTTGTTATATGAGGTTTTCATGTAAAGATCATCTAAAACGCCATTATAGAATTCACACCGGTGAGAAGCCTTATAAATGCAATTACTGTGAGAGAGCCTTCACTCAGAGTAACGATCTTGTCAAGCATACCAGATCTCACATAGGAGATAATATTTACAAGTGTACAGTTTGTGAGGAGAGTTTCCGTCTTTTAAGTGAATTGAAGAACCACTATCCCGTTCACTATCTGAAAGATCCCAACACCGGGGAGTTCTTGAAGAACAGTGTGCAAATGCCCGCCATTTCCGAAGACAATAAAACGTTGATATCGTTCGACAAGCACCTGGATAAAAGTGTTATTTCACAATTAGTCGTAACTAGTAATGatttagaaaattttcaaaaggtACAAACGAAAACCGAACCGAAAGATTGTATACTTCCGGAGGAGATAGCTCCGCCAGAGGTGAAAGTTTACGTCGTCGGTTTTAGTGATCCAAGCCTCGATAAAAATGTGTAA
Protein Sequence: MRMGASGSGDPEGGGAECGGGGVGGGGAGTLLESMCRGCMREESPLVDLFAGTDDATFAATLTLTLADLFMLCAPVQVLKEDGLPQKVCETCIESLSAAYAFRSQCERNDSMLRNILKNQTIPDPAVQIKQEPDVDSMLDVKQEYDDFDDNFVNDDDDDDVSSHHESRKKRKLRKLRVKGGHMCNECGKSFYKASRLMRHMKIHVKVKKESPHSCEVCKKTFVKLSGLTRHMAIHDSEAKPFECASCLQRFKREGLLLRHVAIHTTGIDAQMVDNKEDAMQKYQCEDCEAVFESRHSLSSHMRIHKEKAKEKHYACTVCDKKFSSKNPLNRHMKLHAENKPHKCTLCDKRYSRQDQLLDHINKHNGVKPNICPFCNKAFSQLCNLKDHMRTHTGETPYLCSQCGKGFNNGSNLRQHMMRHTGLKPYSCNLCPKRFSTKGQMTCHVGTHTGAHPYVCDTCGHAFTKPNSLKKHKLIHLGVKPHECDVCYMRFSCKDHLKRHYRIHTGEKPYKCNYCERAFTQSNDLVKHTRSHIGDNIYKCTVCEESFRLLSELKNHYPVHYLKDPNTGEFLKNSVQMPAISEDNKTLISFDKHLDKSVISQLVVTSNDLENFQKVQTKTEPKDCILPEEIAPPEVKVYVVGFSDPSLDKNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -