Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000023.1:4425310-4427347[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.1e-05 0.0017 19.3 3.8 1 23 177 199 177 199 0.98

2 16 1.9e-05 0.0015 19.5 4.9 2 23 206 227 205 227 0.95

3 16 8.6e-05 0.0066 17.4 2.7 1 23 233 255 233 255 0.98

4 16 0.00053 0.041 14.9 5.4 1 23 261 283 261 283 0.97

5 16 8.4e-07 6.5e-05 23.8 1.3 1 23 289 311 289 311 0.99

6 16 0.002 0.15 13.1 2.2 1 23 316 338 316 338 0.98

7 16 2.5e-05 0.0019 19.1 4.0 1 23 344 366 344 366 0.97

8 16 0.0087 0.67 11.1 3.7 1 23 372 394 372 394 0.98

9 16 0.00012 0.0096 16.9 2.4 1 23 400 422 400 422 0.99

10 16 5.2e-05 0.0041 18.1 0.3 1 23 428 450 428 450 0.99

11 16 4.1e-05 0.0032 18.4 0.5 1 23 456 478 456 478 0.98

12 16 0.00021 0.016 16.2 0.5 1 23 484 506 484 506 0.98

13 16 0.00017 0.013 16.5 4.4 1 23 512 534 512 534 0.97

14 16 9.8e-05 0.0076 17.3 1.0 1 23 540 562 540 562 0.98

15 16 8.1e-05 0.0063 17.5 1.7 1 23 568 590 568 590 0.98

16 16 3.9e-06 0.0003 21.7 2.0 1 23 596 618 596 618 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.1e-05	0.0017	19.3	3.8	1	23	177	199	177	199	0.98
2	16	1.9e-05	0.0015	19.5	4.9	2	23	206	227	205	227	0.95
3	16	8.6e-05	0.0066	17.4	2.7	1	23	233	255	233	255	0.98
4	16	0.00053	0.041	14.9	5.4	1	23	261	283	261	283	0.97
5	16	8.4e-07	6.5e-05	23.8	1.3	1	23	289	311	289	311	0.99
6	16	0.002	0.15	13.1	2.2	1	23	316	338	316	338	0.98
7	16	2.5e-05	0.0019	19.1	4.0	1	23	344	366	344	366	0.97
8	16	0.0087	0.67	11.1	3.7	1	23	372	394	372	394	0.98
9	16	0.00012	0.0096	16.9	2.4	1	23	400	422	400	422	0.99
10	16	5.2e-05	0.0041	18.1	0.3	1	23	428	450	428	450	0.99
11	16	4.1e-05	0.0032	18.4	0.5	1	23	456	478	456	478	0.98
12	16	0.00021	0.016	16.2	0.5	1	23	484	506	484	506	0.98
13	16	0.00017	0.013	16.5	4.4	1	23	512	534	512	534	0.97
14	16	9.8e-05	0.0076	17.3	1.0	1	23	540	562	540	562	0.98
15	16	8.1e-05	0.0063	17.5	1.7	1	23	568	590	568	590	0.98
16	16	3.9e-06	0.0003	21.7	2.0	1	23	596	618	596	618	0.98

Sequence Information

Coding Sequence: ATGGAGTGTCGTCTTTGTCTATCATCCACATCGTCGATTCAAATTTGGAGACCACCGGAAACACTGGCATTGCAGATTTGGAGCTGCTGTCAGTTACAGGTAGAAAAAAACGACGGATTGCCAGATTCGATATGCATGTCGTGCGAGTCTAATCTTGAGCATTTCGATCATTTTAAAAAGTCCTGCGAGCGGGCCGATGAAATTCTACGACAGAGATTAACGCAACATGTCAATATGAAAATCGAAGATGTCGCGTTCAAAAACGAGGACTGGAGGAATGACCATTACAGCAACAACGGCATGTCAACATATAATCCATATTCGTATGTAAGCAATAGAAATTCTTATGATCAACGATACTCTTCTAAGGACGTTGTGCATCAACATCGCAGTTCTGAAGACAAAAAACCAATTTTACGTGAAATATCTATTAATAAGGAATTGATAGAATGCAAAATCATCGAAGAGAATCTTtcaaagATAAGTAATTCAGGTTTACAAGATAGACTGACGAATCACGACAAACTGTACAAATGCGAAATTTGTACAAGAGCATTCAGCACGAAGCATAAACTGAACTTGCACAAAAAGATCCACTCGTACGACGTTCAGTGCTGCTGTGACTATTGCGGTAAAGTGCTCAAGTCAAAGACGAATCTTCAGCGGCATATCCTCTCACATACGCGGAACAAACCATATCAGTGCAGAGTGTGTTTGAAGAAATTCTCCTTCAAACACGACCTAACAGCTCATATAACGGTGCACGCGACAGAGCCTCTTCACAAGTGCGACGTCTGCTCCAAAACGTGTTCCACCAAAAGGCTCTTGAAGCAGCACACCATAGTACACTCCAGTGAGAAAGCTTACACGTGTACAATTTGCTCTAGAGCCTTTTCAGTTAAGCAATCCCTAACAAAGCACATGAAGATACATGGAGAACGTCCCTACAAATGTAATGTCTGTTCTCGGACCTTTTTCTCTAAACAAACATTCGACGACCATGCTAAGATTCATGCGGAGAATTACGGTCACATTTGCGACTATTGCAGCAGGGTCTTCAAGAAAAAGACTAACCTACGATACCACATTTCGACACATACGGGAGAAAGACCTCACAAATGCGAGCTCTGTCCCAAAGCGTACTTCTGCAAGGGCACGCTAACTAAACACATGCTCGTTCACACGGGTGAGCGGCCATTCAAGTGTGAGTCTTGCTCTAAAGCCTTCAGCAccatgtttaaattaaaaagccACTTATTAACGCATCCGGAGAATAAGCCGTACAAATGCGCGGTGTGTTTGAAAGCGTTCGGCTCTAAAAGCAACTATTCCGATCACATCAAAGTGCATACGGGAGAGCGGCCGTACGAGTGCGACACATGCTCGAAGACGTACATCAGCAAACAAGCTTTAAAAGAGCATGTTAAAGTCCACGGAGAGAATTTCGGGTTTGTTTGTGATCATTGCGGAATCAGAATCACAGTTAAGGCAAATTTCCAACTGCACATCTTGACACATAGTGCGGAACGGCCGCACAAGTGCAATGTGTGTTCCAAGTCGTTTTCGTTGAAGCGGGCTTTGAAAGATCACATGCACGGTCATACGGGCGAAAGGCCGTACAAGTGTGGTGTTTGCACAAAGGCGTTCTTCGCCAAGGGGACGCTGAGGAAACATCTGAAACTTCACTCGGGGGAGAGACCGCACAAGTGCGAAATTTGCCTGAGGGCGTTCTCGATCAAACAGTCGTTGACGAAGCATATTAAAGTACATACGGGTGAAAGACCACACAAGTGTGAAGTTTGTTTAAAAGCCTTCGGGACAAAGTATAATTTGAAGACGCACATGAACGTCCACAATAGAGagaaataa
Protein Sequence: MECRLCLSSTSSIQIWRPPETLALQIWSCCQLQVEKNDGLPDSICMSCESNLEHFDHFKKSCERADEILRQRLTQHVNMKIEDVAFKNEDWRNDHYSNNGMSTYNPYSYVSNRNSYDQRYSSKDVVHQHRSSEDKKPILREISINKELIECKIIEENLSKISNSGLQDRLTNHDKLYKCEICTRAFSTKHKLNLHKKIHSYDVQCCCDYCGKVLKSKTNLQRHILSHTRNKPYQCRVCLKKFSFKHDLTAHITVHATEPLHKCDVCSKTCSTKRLLKQHTIVHSSEKAYTCTICSRAFSVKQSLTKHMKIHGERPYKCNVCSRTFFSKQTFDDHAKIHAENYGHICDYCSRVFKKKTNLRYHISTHTGERPHKCELCPKAYFCKGTLTKHMLVHTGERPFKCESCSKAFSTMFKLKSHLLTHPENKPYKCAVCLKAFGSKSNYSDHIKVHTGERPYECDTCSKTYISKQALKEHVKVHGENFGFVCDHCGIRITVKANFQLHILTHSAERPHKCNVCSKSFSLKRALKDHMHGHTGERPYKCGVCTKAFFAKGTLRKHLKLHSGERPHKCEICLRAFSIKQSLTKHIKVHTGERPHKCEVCLKAFGTKYNLKTHMNVHNREK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -