Basic Information

Insect: Arctopsyche grandis
Gene Symbol: -
Assembly: GCA_029955255.1
Location: JARCGT010000065.1:1961923-1986370[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.5e-05 0.005 17.8 0.2 1 23 110 132 110 132 0.98

2 18 0.00027 0.021 15.9 2.9 1 23 138 160 138 160 0.99

3 18 0.046 3.5 8.9 0.1 2 16 167 181 166 183 0.89

4 18 3.5e-05 0.0027 18.7 0.5 1 23 256 278 256 278 0.98

5 18 0.0003 0.023 15.7 5.0 1 23 284 306 284 306 0.99

6 18 0.00012 0.0094 17.0 1.7 2 23 313 334 312 334 0.97

7 18 3.9e-05 0.003 18.5 0.6 1 23 460 482 460 482 0.98

8 18 0.00034 0.027 15.5 4.3 1 23 488 510 488 510 0.99

9 18 4e-05 0.0031 18.5 2.0 2 23 517 538 516 538 0.97

10 18 0.00044 0.034 15.2 0.1 1 23 544 566 544 566 0.98

11 18 3.3e-05 0.0026 18.7 1.4 1 23 572 594 572 594 0.99

12 18 8.2e-06 0.00063 20.7 0.2 1 23 600 622 600 622 0.98

13 18 6.7e-07 5.2e-05 24.1 2.9 1 23 754 776 754 776 0.98

14 18 8.5e-06 0.00066 20.6 2.9 1 23 782 804 782 804 0.99

15 18 0.036 2.8 9.2 0.5 1 16 810 825 810 827 0.94

16 18 2.8e-05 0.0022 19.0 7.4 1 23 917 939 917 939 0.98

17 18 8.6e-05 0.0067 17.4 0.1 1 23 956 978 956 978 0.98

18 18 2.6 2e+02 3.3 0.4 1 14 984 998 984 1001 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.5e-05	0.005	17.8	0.2	1	23	110	132	110	132	0.98
2	18	0.00027	0.021	15.9	2.9	1	23	138	160	138	160	0.99
3	18	0.046	3.5	8.9	0.1	2	16	167	181	166	183	0.89
4	18	3.5e-05	0.0027	18.7	0.5	1	23	256	278	256	278	0.98
5	18	0.0003	0.023	15.7	5.0	1	23	284	306	284	306	0.99
6	18	0.00012	0.0094	17.0	1.7	2	23	313	334	312	334	0.97
7	18	3.9e-05	0.003	18.5	0.6	1	23	460	482	460	482	0.98
8	18	0.00034	0.027	15.5	4.3	1	23	488	510	488	510	0.99
9	18	4e-05	0.0031	18.5	2.0	2	23	517	538	516	538	0.97
10	18	0.00044	0.034	15.2	0.1	1	23	544	566	544	566	0.98
11	18	3.3e-05	0.0026	18.7	1.4	1	23	572	594	572	594	0.99
12	18	8.2e-06	0.00063	20.7	0.2	1	23	600	622	600	622	0.98
13	18	6.7e-07	5.2e-05	24.1	2.9	1	23	754	776	754	776	0.98
14	18	8.5e-06	0.00066	20.6	2.9	1	23	782	804	782	804	0.99
15	18	0.036	2.8	9.2	0.5	1	16	810	825	810	827	0.94
16	18	2.8e-05	0.0022	19.0	7.4	1	23	917	939	917	939	0.98
17	18	8.6e-05	0.0067	17.4	0.1	1	23	956	978	956	978	0.98
18	18	2.6	2e+02	3.3	0.4	1	14	984	998	984	1001	0.82

Sequence Information

Coding Sequence: ATGGTGGGTCGAGAGGGGGGAGCGGAGATCGAGACGCCCGTCGAAACTCGTCTAGCAGTATATGAATATGCTAATGAGGATTGGGAAGATGCTCACATGACATTTTATCGTAGAAGTAGAATGAGTGAAAAAACACAGAAACTAAGGCAGAACGGCAGTTGTGATATCAAAATAGAAGAAATTATATTGGATGATTTGAATTGGCAGGATGAGATTGGTAATAATTCAACATCAAATGAGTCAAGAAATTCGGGTAATCACAATGCCTTATTACTAGAAAATGGAAATGTCAAGAAAAATTCGCAAAGAATCAGAAAGAAATACACGTACAAATGCGAAGTGTGTTCTAAGTCATACACTGCTAAAGCTAACTTAGTGGATCATGTGAATTCTCACAAAGGGATAAAAGCATACCAATGCAAAGTCTGTTTGATTTCATACACTCATAAGCCTACATTACAGCGACACGAAAAAACTCATACCAGGGACAAACAATTGAAATGCGATATTTGTCCTAAGTCTTTCATTCTGAGTCGTAACTTGAGTGAAAAAACACAGAAACTAAGGCAGAACGGCAGTTGTGATATCAAAATAGAAGAAATTATATTGGATGATGTGAATTGGCAGGATGAGATCGGTAATAATTCAACATCAAATGAGTCAAGAAATTCGGGTAAAGTATTCTTAGAAGGTAATCACAATGCCTTATTAATAGAAAATGGAAACGTCAAGAAAAATTCGCAAAGAATCAGAAAGAAATACACGTACAAATGCGGTGTGTGTTCTAAATCGTTCACTGTTAAAGCTAACTTCGTGGATCATGTGAATTCTCACAAAGGGATAAAGGCATACCAATGCAAAGTTTGTTTGACTTCATACACTCATAAGACTACATTACAGCGACATGAAAAAACTCACACCGGGGACAAACAGTTGAAATGCAATATTTGTCCAAAGTCGTACATTCTGAGGCGTAACTTAGTGCATCATTTAAAATCTCACGCTGAGATTAAATCGTACCAATGCGATATGTGTTCTAAAGTTGATAATGATGATCTGTTGCCAGATACGATATGTCTTTTATGTAaaaacaatctggaattgttaaGCAATTTTAAGAACATTTGTATTCAGAGTGATAAAACACAGAAACTAAGACATGGAGGCAGCtgtgatattaaaatagaaGAAATTATATTGGATGATGTGAATTGGCAGGATGAGATCGGTAATAATTCAACATCAAATGCCTGTCGACAGGCCATTGACAAGTCAAGAAATAGGGGGAAAGTATTCTTAGAAGGAAATCCAAACgccttattaataaaaaaaggaaatgtCAAGAAAAATTCGCAAAGAATCAGAAAGAAATACACGTACAAATGCGGAATGTGTTCTAAATCGTTCAGTGTTAAAGCTAACTTCGTGGATCATGTGAATTCTCACAAAGGGATAAAAGCTTACGAATGCAAAGTTTGTTTGACTTCATACACTCATAAGACTACATTACAGCGACATGAAAAAACTCACACCGGGGACAGACCGTTGAAATGCCACATTTGTCCAAAATCGTACATTCTGAGGCGTAACTTAGTGCGTCATTTAAAATCTCACGTTGAGATTAAATCGTACCAATGCGATATGTGTTCTAAGATATTCACCGCTAAACCTGACCTTGTGGATCATATTGATTCTCACAACAGGATAAAAGCATACCAATGCAAAATTTGTGCGGTTTCATTCACATATCAGTCTGCTTTCAAGAGCCATTTAAAATCTCACGACTGTATGAAGCAATTCCAATGCGAAATTTGCTCTAAATCGTTCACTGCTAAACCTAATCTCGTAGATCATATAAATTCTCACAAAGGGATAAAAGCATACCATTGTGaagttAATAAAGATGATTTATTGCCTAATACCATATGTCTTTCATGCAAAAACAATCTGGGATTGTTAAGCAACTTTAGAAACACTTGTATTCAGAGTGaagaaacacaaaaacaaaGGCTCACCGAGGGTTCAGATATCAAAATAGAAGAAGTTATAGTGGATGATTTAATTTGGGAGGATGAGATTGATATTAATTCAACATCGGCAGTTGAAGATGCGATTAATGAATCAAATTCGAGCAATTCGGGGAAAGTATTTTTAGGAGACCATTCAAAGCAAAACGCCTTATTaatagaagataaaaatatCAGGAAAAATTCACAAataCGTGCCAGATACAGAAAATCTCACAATGGGATGATATCGCACAAATGCGAAATCTGCTCAAAATCGTTCACTACTAAAACTAACCTCGTAGATCACATGAATTCTCACACTGGGTTAAAACTGTACCGATGTGAATTGTGCTCGATTTCATTCGCTCATAGGTCTTCCCTCAGGAAACATGTAAAAACTCACACAGGGGAGAGACGGTTCAAATGCGAAATGTGTCCTAAACTTTTCAATGATAAATTTAACCTCAGTGAGGAAACACAGAAACAAAGGCTCGCTGAGAGTTTATATATCAAAATAGAAGAAGTTATATTGGATGATTTAATTTGGAAAGATGAGATTGgtattaattcgacattggctGTTAAAGATGAGACTAATAAATCAGAGCTAATCAATTCAGGGAAAGAATTTTTAGGAGACTATTCAAAGCAAAACGCTTTATTAATAGAACATGAAAATGTCAGGAAAAATTCACAAATACGTGCCAGATACAGAAAATCTCACAATGGGGTGATATCGCACAAATGCGAAATCTGCTCAAAATCGTTCACTACAAAATGTAGCCTCAAGCGACATGTAAAATCTCATACGGGGAAGTCGAAGCATAGCCTAGTGATTTATATGAAATCTCAAACGTACGAATGCGATTTATGTTCTGAATCGTTCAACGCTAAAGCTAACCTCATAGAACACATCAATTCTCACaatgggataaaaccataccaatgtaaaGTCTGCCCTCTCGAAACATTCAAAAACTCATACCAAAGAGAGTCTGTTCAAATGCGATATTTGTTCAAGAACTTACATTCTGAAGCATAA
Protein Sequence: MVGREGGAEIETPVETRLAVYEYANEDWEDAHMTFYRRSRMSEKTQKLRQNGSCDIKIEEIILDDLNWQDEIGNNSTSNESRNSGNHNALLLENGNVKKNSQRIRKKYTYKCEVCSKSYTAKANLVDHVNSHKGIKAYQCKVCLISYTHKPTLQRHEKTHTRDKQLKCDICPKSFILSRNLSEKTQKLRQNGSCDIKIEEIILDDVNWQDEIGNNSTSNESRNSGKVFLEGNHNALLIENGNVKKNSQRIRKKYTYKCGVCSKSFTVKANFVDHVNSHKGIKAYQCKVCLTSYTHKTTLQRHEKTHTGDKQLKCNICPKSYILRRNLVHHLKSHAEIKSYQCDMCSKVDNDDLLPDTICLLCKNNLELLSNFKNICIQSDKTQKLRHGGSCDIKIEEIILDDVNWQDEIGNNSTSNACRQAIDKSRNRGKVFLEGNPNALLIKKGNVKKNSQRIRKKYTYKCGMCSKSFSVKANFVDHVNSHKGIKAYECKVCLTSYTHKTTLQRHEKTHTGDRPLKCHICPKSYILRRNLVRHLKSHVEIKSYQCDMCSKIFTAKPDLVDHIDSHNRIKAYQCKICAVSFTYQSAFKSHLKSHDCMKQFQCEICSKSFTAKPNLVDHINSHKGIKAYHCEVNKDDLLPNTICLSCKNNLGLLSNFRNTCIQSEETQKQRLTEGSDIKIEEVIVDDLIWEDEIDINSTSAVEDAINESNSSNSGKVFLGDHSKQNALLIEDKNIRKNSQIRARYRKSHNGMISHKCEICSKSFTTKTNLVDHMNSHTGLKLYRCELCSISFAHRSSLRKHVKTHTGERRFKCEMCPKLFNDKFNLSEETQKQRLAESLYIKIEEVILDDLIWKDEIGINSTLAVKDETNKSELINSGKEFLGDYSKQNALLIEHENVRKNSQIRARYRKSHNGVISHKCEICSKSFTTKCSLKRHVKSHTGKSKHSLVIYMKSQTYECDLCSESFNAKANLIEHINSHNGIKPYQCKVCPLETFKNSYQRESVQMRYLFKNLHSEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00158468;
90% Identity: iTF_00158468;
80% Identity: -