Agra005627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000014.1:6665221-6681196[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.00015 0.012 16.7 0.4 2 23 162 183 161 183 0.97
2 17 3e-06 0.00024 22.0 0.7 1 23 189 211 189 211 0.98
3 17 5.5e-06 0.00043 21.2 2.7 1 23 217 239 217 239 0.99
4 17 5.1e-05 0.004 18.1 0.8 1 23 254 276 254 276 0.98
5 17 1.4e-05 0.0011 19.9 4.0 1 23 291 313 291 313 0.98
6 17 5.8e-07 4.5e-05 24.3 0.7 1 23 328 350 328 350 0.99
7 17 0.00016 0.013 16.6 2.8 1 23 356 378 356 378 0.98
8 17 1.4e-07 1.1e-05 26.2 0.8 1 23 384 406 384 406 0.99
9 17 0.076 5.9 8.2 1.4 1 23 413 435 413 435 0.98
10 17 2.8e-06 0.00022 22.1 2.1 1 23 441 463 441 463 0.99
11 17 0.043 3.3 9.0 1.8 1 23 470 492 470 492 0.98
12 17 2.5e-06 0.0002 22.3 1.5 1 23 498 520 498 520 0.99
13 17 0.0026 0.2 12.8 0.7 1 23 527 549 527 549 0.99
14 17 8.5e-06 0.00066 20.6 1.2 1 23 555 577 555 577 0.99
15 17 0.002 0.16 13.1 0.3 1 20 583 602 583 605 0.93
16 17 1.3e-05 0.001 20.0 1.2 2 23 612 633 611 633 0.97
17 17 2.2e-05 0.0017 19.3 1.8 1 23 639 662 639 662 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAAATTAAATCTGAACCAATGGGTTTTTATTCATCTCATCCACATGTGCACTCGGCTCCCCCAGCTGTTGTGCGCAGTGAAAACTCAAATCATGCCATCATCAATATCAATAGTCAGTCGCAACACCAGCAgcaacaacagcagcagcaacatCAGCAACAGTTGCAACAGCAACAACAGTTACAGCAACAGCAATTGcaacaacagcaacagcaacagcagcagcaacaacaacaacaacaacagcagcagcaacaacaacagcaacagcaacaacaaGATCAATTAGACAATCAAGAGGATAGTAAAGACAGTTTAATCATTCAGCAACAAGTTGGCGTTATCGGTTCAAGTCAATCAGTTCAAGATGAAAGTGAAGGACTTGAGGTGGGTGGGTTGGGCACCGTGCAGACTAAGCTGGAGCTTGGGAGCGTGCTGCCAGGGGTGCCTCCGCCTCGATCCAAGCCTCAAGAGTGCAAACTTTGTGGCAAGATGCTCTCGTCAGCCTCCTCTTATTACGTTCACATGAAACTGCATTCAGGAGTCAAACCTTTTGCTTGCACGgTGTGTGATGCGGCTTTTTGTCGTAAGCCTTATTTGGAAGTTCACATGAGAACCCATACTGGTGAACGCCCGTTTCAGTGTGAGCTTTGTCTCAAAAGATTCACACAAAAATCTAGTCTTAATACGCACAAGAGAGTACACACAGAGGAACACAGGCGAGCGCTACTAGCCAAGGAACGCCCCTACCAATGTGACATCTGCTTTGTACGATTCACGCAGAAATCCAGCCTGGGTCGTCACGGAAAAATACATACTGAGGAGCACAGGCGAGCTTTATTAGACAAAGTGCGTCCCTTCCAGTGCCACATCTGTTTTTTGCGGTTCACTCAGAAGTCCAGCCTCAACCGTCATGGAAAAGTTCATACGGAGGAACACATGCATTCGCTGATCAACAAAGTGCGTCCTTACCAATGCGACGTCTGTGACAAGCGTTTCACTCAGAAATCCAGCCTTGGCACCCACGCTCGCATTCACACCGGAGAGCGCCCATTCCAGTGCACCGTCTGCCTCAAGTCCTTCACACAGAAATGTGCACTCAATTTGCACGAAAAGATACATTCGGGGGAGCGGCCCTACCAGTGCGAGATCTGCGTCAAGCGCTTCACGCAGAAATCCAGCCTAGAGGTGCACGTGAGGACGCACTCAGTCCAGGGTAGGCCGTTCCAGTGTACCGCTTGTCCGGCCGCGTTCACCTGCAAACAGTACCTGGAGATACACAACCGCACGCACACCGGGGAGCGGCCGTACGAGTGTGATCTGTGCCTGAAGCGTTTCACCCAGAAATCGAGTCTCAACATCCACAAGCGGACGCATTCAATTCAAGGCAGACCGTTTCAATGTCTCCAATGTCCGGCAGCGTTCACGTGCAAACAATATTTGGAAATACACAATCGGACGCACACCGGCGAACGGCCATACCAATGCGACGTGTGTCTGAAAAGATTCGCCCAAAAGTCTACGCTCAACATTCACAAAAGAACGCACacagTCCAGGGCAGACCGTTCCAATGCCTGCAGTGTCCAGCGGCGTTCACTTGCAAGCCTTACCTGGAGATACACATACGAACGCACACAGGAGAGCGGCCTTATCAATGTGACCTTTGTCTGAAGCGATTTGCCCAGAAGTCAACACTCAACATCCACAAGCGAATTCACACCGGTGAGCGTCCGTATGCATGCGACATTTGTCAGAAAAGATTTGCAGTCAAGAGTTACGTCACGGCACACAGGTGGTCACACGTTGCAGAAAAGCCTTTAACTTGTGACCGTTGTTCGATGACGTTCACGTCCAAGTCTCAATTTGCAATACACATTCGCACACACACAGGCGGTCAATGTTTTGAGTGCAGTGTCTGCGGGCGAACCTTCATGAGAGATAGTTACCTGATCAGACATCATAATAGAGTGCATCGAGAAAATCATAGCAATGTCTCAGCGAACAGCATCACTCCCATCAACAGTGTCGCTACTAATACAAACACATCGAGCGCTTTCGATTCGCCTGGCGTTTGCGatttaagTTTTGTACCGATGGTGAATCGTTATGTGACGGGTATCACTGCTGGAATGACATCCCAGGGAACTCAAGTGTCACTGCAGGATACGTTAATTCAACCTAAGTCACATCCACTATCACCTTCATCCATAGGCTCGCCACCGCCTCCTCATACTCCAACTCCGGGTCCACCGCAATCCATGTAG
Protein Sequence
MFEQQIKSEPMGFYSSHPHVHSAPPAVVRSENSNHAIININSQSQHQQQQQQQQHQQQLQQQQQLQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQDQLDNQEDSKDSLIIQQQVGVIGSSQSVQDESEGLEVGGLGTVQTKLELGSVLPGVPPPRSKPQECKLCGKMLSSASSYYVHMKLHSGVKPFACTVCDAAFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTEEHRRALLAKERPYQCDICFVRFTQKSSLGRHGKIHTEEHRRALLDKVRPFQCHICFLRFTQKSSLNRHGKVHTEEHMHSLINKVRPYQCDVCDKRFTQKSSLGTHARIHTGERPFQCTVCLKSFTQKCALNLHEKIHSGERPYQCEICVKRFTQKSSLEVHVRTHSVQGRPFQCTACPAAFTCKQYLEIHNRTHTGERPYECDLCLKRFTQKSSLNIHKRTHSIQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPFQCLQCPAAFTCKPYLEIHIRTHTGERPYQCDLCLKRFAQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVAEKPLTCDRCSMTFTSKSQFAIHIRTHTGGQCFECSVCGRTFMRDSYLIRHHNRVHRENHSNVSANSITPINSVATNTNTSSAFDSPGVCDLSFVPMVNRYVTGITAGMTSQGTQVSLQDTLIQPKSHPLSPSSIGSPPPPHTPTPGPPQSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01012592;
90% Identity
-
80% Identity
-