Agra017946.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000065.1:1928333-1934937[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0014 0.11 13.7 3.0 1 23 154 176 154 176 0.98
2 22 2.8e-05 0.0022 19.0 0.4 2 23 190 211 189 211 0.96
3 22 0.00023 0.018 16.1 0.2 1 23 217 239 217 239 0.98
4 22 0.00011 0.0085 17.1 2.8 1 20 245 264 245 267 0.94
5 22 0.00042 0.032 15.3 3.9 1 23 273 295 273 295 0.98
6 22 0.008 0.62 11.2 4.4 1 23 307 329 307 329 0.97
7 22 0.38 29 6.0 0.3 1 11 335 345 335 349 0.90
8 22 5.5 4.3e+02 2.3 0.1 5 17 360 372 358 373 0.89
9 22 0.029 2.2 9.5 9.8 1 21 383 403 383 405 0.96
10 22 0.00089 0.069 14.2 4.4 1 23 410 432 410 432 0.98
11 22 1.1e-05 0.00088 20.2 3.3 1 23 438 460 438 460 0.99
12 22 6.8e-05 0.0053 17.8 0.6 1 23 466 488 466 488 0.99
13 22 1e-05 0.0008 20.3 3.2 1 23 494 516 494 516 0.99
14 22 6.4e-05 0.005 17.8 1.3 1 23 522 544 522 544 0.97
15 22 7e-05 0.0054 17.7 1.4 1 23 556 578 556 578 0.98
16 22 3.9e-06 0.00031 21.7 2.0 1 23 584 606 584 606 0.99
17 22 0.00012 0.0093 17.0 4.4 1 21 612 632 612 634 0.96
18 22 0.00017 0.013 16.5 2.7 1 23 652 674 652 674 0.98
19 22 1.6e-05 0.0012 19.7 1.9 1 23 680 702 680 702 0.99
20 22 0.00019 0.014 16.4 0.3 1 23 708 730 708 730 0.98
21 22 2.3e-05 0.0018 19.2 1.3 1 23 736 758 736 758 0.98
22 22 0.00055 0.042 14.9 3.3 1 23 764 786 764 786 0.98

Sequence Information

Coding Sequence
ATGGAATGTAGACTTTGTCTCTGTGCTGTTCCAGTGGAGTCCTCTGTCTCCATCCACGACTATCCTCATCCACTAGTTCAACGCATTTTGACTGACTGTCAGCTACAAgTTGATAAAGATGATTCGTTGCCAGATACGATATGTCTTTTATGTAAAAACAAACTAAAATTGTTAAGCAATTTTAGGAACATTTGTATTCAGAGTGAAGAAACACAGAAACTAAGGCTGGCTGAAAGTTCAAATCTCAAAATGGAAGAAATCATATTGGATGATTTAATTTGGGAGGATGATATTGATATTAACTCAACATCAAATGTATGTCAACCGACCGTTGACGATGAGATTAATAAACCAAAGTCACGAAATTCGGATAAAGTATTTATAGAAGCAGACCATTCAAAGCAAAACGCCACATCAATAGAAAATGATAatgccaaaaaaaaatcacaaaaaaacccatacaaatgtgaaactTGTTCCAAATCTTTCAAATACAGATCTATTTATGTGAGACATGTGAAATCTCACAATAAAGACTCGCACAAATGTGACCAAGTAAAAACACTCAAATGCGATATATGTTCTAAAATGTTCATGTTTAAATCAAGCCTCGTGGCGCATATGAATGCTCACCAAGGGATAAAACCATACCAGTGCGATGTTTGTATTGTTTCATTCACTCAAAAGTCTAGCCTCAAAATACATGCTCAAATTCACTTCGGGGAGAGACTTTTCAAATGCGACATTTGTCCAAAGTCGTTCAATCAGAGGGGTACACTCATTAACCATAAGCAATGTCACATTGGGGTGAAATCCCACAAATGTGACGTGTGTTTCAGATCGTTCACTTTAAAGAAAACCCTAGTTTTACATATGAAATCCCACACTGGGGCGAAATGTCGCACTATGGCGAAATTACACACATGCGAAATGTGTTCTAAATCGTATACTACCAGATCTCGCCTAGTGTTTCATATGAAATCTCACACTGGGACGAATTCGCACACATGCTATATATGTTCTAAATCGTTTACTGGTCTAGCTTCAGAAGACATGCTAAAACTCATACCGGGGAGAAAGTGTTCGAAGACGTTCACTTTGAAGGATACCCTAACACTTGGAGGAGAATCCACACAGGAGAgtccatacaaatgtgaaactTGTTCCAAATCGTTCAAATACAAATGCTATTATGTGAGACATATGAAGTGCCACAATAAGGACtcgcacaaatgtgacatttgcttaaaatcattcacttttAAACACACCCTTGTGGAGCATGTGAATTCTCACAACGGGATAAAACCGTACCGATGTGACGTCTGTTTGATTTCGTTCACTCATAGGTCTACCCTCAGGAGACATGTGAAAACTCACACAGGCGAGAGACGGTTCAAATGCGAAACGTGTCTCAAGCTTTTCATTGATAAATCCAGCCTCGTGGAGCATATGAACTCTCACAATGGGATAAAACCGTACCAATGTgaagtttgtttgttttcattCACTCACAGATCTGCTCTAAAGCGACATGTAAAAACTCACACCGGGGAGCGCCTGTTTAAATGCGACATTTGTTCAAAGTCGTACACCCTGAAGCATTACCTAGCGGTTCATATGGAAGCTCACACCGGGGTGAAATCTCCCACTGGGGCAAAATTGCACAAATGTGTAATGTGTTCCAAATCGTTCATTGCCAAATCTAGCCTTGTGGAGCATATGAATTCTCATAATGGCATAAAACCGTACCAATGTGAAGTTTGTTTGATCTCATTCACTCATAGGTCTGCCCTCAGGCGACATGTTAAAACCCACACCGAGGAGAGACTGTTCAAATGCGAAATTTGTCCAAAGTCGTTCACTATGAAGCATTACCTAGTGGTTCATATGAAATGTCACACTAGGGTGAAATCTCCCACTGGGGCGAAACCTCCCACTGTGGCGAAATCGCATGAATGCAACGTATGTTCTAAATCGTTCATTGCCAAGTCTTGCCTCGTGGAGCATATGAATTCTCACAATGGGATAAAACCGTACCGATGTGAGGTTTGTTTGATCTCATTCACTCATAGGTCTGCCCTTTCGAGACATGTAAAAACTCATCCCGAGGGGACACTGTTCAAATGCGACATTTGTTCGAAGTTGTTCACTCTGGAGTATGCCCTGATGGTTCATATGGAATCTCACACTGAATCCAAACTACACAAGTGTGAATTGTGTTCCAAATCGTTCGCTGCCAAATCTAACCTCCTGGGTCATATGAATTCTCAcaatgggataaaaccacaccgATGTGAAGTTTGTTTGATTTCTTTCGCTCACAGGTCTTCCCTCTCGAGACATGGAAAAACGCACGCTGATGAGAGAAGCTTCAAATGA
Protein Sequence
MECRLCLCAVPVESSVSIHDYPHPLVQRILTDCQLQVDKDDSLPDTICLLCKNKLKLLSNFRNICIQSEETQKLRLAESSNLKMEEIILDDLIWEDDIDINSTSNVCQPTVDDEINKPKSRNSDKVFIEADHSKQNATSIENDNAKKKSQKNPYKCETCSKSFKYRSIYVRHVKSHNKDSHKCDQVKTLKCDICSKMFMFKSSLVAHMNAHQGIKPYQCDVCIVSFTQKSSLKIHAQIHFGERLFKCDICPKSFNQRGTLINHKQCHIGVKSHKCDVCFRSFTLKKTLVLHMKSHTGAKCRTMAKLHTCEMCSKSYTTRSRLVFHMKSHTGTNSHTCYICSKSFTGLASEDMLKLIPGRKCSKTFTLKDTLTLGGESTQESPYKCETCSKSFKYKCYYVRHMKCHNKDSHKCDICLKSFTFKHTLVEHVNSHNGIKPYRCDVCLISFTHRSTLRRHVKTHTGERRFKCETCLKLFIDKSSLVEHMNSHNGIKPYQCEVCLFSFTHRSALKRHVKTHTGERLFKCDICSKSYTLKHYLAVHMEAHTGVKSPTGAKLHKCVMCSKSFIAKSSLVEHMNSHNGIKPYQCEVCLISFTHRSALRRHVKTHTEERLFKCEICPKSFTMKHYLVVHMKCHTRVKSPTGAKPPTVAKSHECNVCSKSFIAKSCLVEHMNSHNGIKPYRCEVCLISFTHRSALSRHVKTHPEGTLFKCDICSKLFTLEYALMVHMESHTESKLHKCELCSKSFAAKSNLLGHMNSHNGIKPHRCEVCLISFAHRSSLSRHGKTHADERSFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-