Agra012837.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000031.1:3161518-3162978[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 8.5e-05 0.0066 17.5 2.8 1 23 14 36 14 36 0.98
2 17 5.6e-07 4.4e-05 24.3 1.0 1 23 42 64 42 64 0.98
3 17 9.2e-08 7.1e-06 26.8 1.8 1 23 70 92 70 92 0.99
4 17 2.4e-06 0.00018 22.4 0.8 1 23 98 120 98 120 0.99
5 17 0.00088 0.068 14.3 3.0 1 23 126 148 126 148 0.99
6 17 8.4e-06 0.00065 20.6 2.9 1 23 154 176 154 176 0.98
7 17 4.8e-06 0.00037 21.4 3.8 1 23 182 204 182 204 0.99
8 17 1e-07 7.7e-06 26.7 4.5 1 23 210 232 210 232 0.99
9 17 2.9e-05 0.0023 18.9 5.4 1 23 238 260 238 260 0.98
10 17 1.6e-06 0.00012 22.9 1.5 1 23 266 288 266 288 0.99
11 17 3.1e-06 0.00024 22.0 3.4 1 23 294 316 294 316 0.98
12 17 0.00016 0.013 16.6 3.9 1 23 322 344 322 344 0.98
13 17 3.3e-07 2.6e-05 25.0 1.0 1 23 350 372 350 372 0.98
14 17 1.5e-06 0.00012 23.0 0.3 1 23 378 400 378 400 0.98
15 17 4.3e-06 0.00033 21.5 0.7 2 23 407 428 406 428 0.97
16 17 2.3e-05 0.0018 19.2 1.6 1 23 434 456 434 456 0.98
17 17 3.3e-05 0.0026 18.7 1.0 1 23 462 484 462 484 0.98

Sequence Information

Coding Sequence
ATGGCACTTCATGTAAGACGtcacgatgaaaaaaaaatattcaaatgcgaAATCTGCTCCAAATGTCTAAGAACCAACAAAGGCTTGATGCGACATGTGGAACGTCACACTGGAGAAAAACCATTCGAATGTGAAGAATGCTCAAAACGTTTTGTAACCAAAGGTGAATTAAAAACTCACGTCAGACGTCACACCGATGAGAAACAATTCAAGTGTGAAATATGCGGAAAATGTTTTGCTAGATCTAATAGTTTGATTGAACATATAAAACGTCACACTGGGAATACACCGTTCAAATGCGAAATATGCTTAAGAGGTTTTATACAAAAGAGAGAGTTGACCATTCATATGAGACGTCACTCCGGAgaaaaaccattcaaatgtgaAGTCTGTTCAAAAATGCACACAAGCAAGAGTGAATTGGGAAACCATATGAAACGCCATACTGGTCTTAAATCATTCAAATGTGATATATGCTTCAAATTTTTCACGAGCTCCGGCGAATTGTTGGTTCACATGAAGCACCACACTGCAGAGAAGCCGTTCCAATGTGAAGTATGCTCTAAATGTTTCGTACAAAatgataaattcaaaattcacaTGATGCGTCACAACGGTGACAAACCattcaaatgtaaaatatgtCCAAAATGTTTTGTGAGAAAAAGTGACTTAAAAATTCATACGAGACGCcacactggggaaaaaccattcATATGTGAGATATGCTCCAAGTGCTTCGTAAGCAATTGTGACTTCAAAGCACATATGAAACGCCACATCGGCGAGAAACGATTCAAATGTGAAATATGCACCAAGTTCTTTGTCAAGAACAGTGAATTAGTACTTCACATGAAACGTCACATTGGGGAAACGGAATTCAAATGTGAAGTATGCTCCAAATGTTTCATTAACAATAACGAACTAACAACCCACATGAGCCGccacactggggaaaagccgTTCAAATGTGAGATATGCCCCAAGCGCTTCTTCACCAAGAGGGGCTTAATGCTACATACGAAACATCACACCGATGTAAAGCCGTTCGAGTGCAAAATATGCCCCAAATGCTTCGTCAGCGATAGTGAATTGGTGATTCATATGAGACGCCACACCGGCGAAAAACCGTTCAATTGCGAAATATGTTCGAAGGCTTTCATAAGCAACGGCAGCTTGACTGAACATATGAATCGCCACACCGAAGAAAAGCCAATCCAATGTGACGTATGCTCGAAACGCTTTGTACAAAATGATAAATTCATAATTCACATGAGACGTCACACGGGTGAGAAGCCGTTCAAATGTGAAATGTGCTCGAAATGTTTCGTAAGCAATAGTGAATTGGGAATCCATGCGAAATCCCATACCGGGGAAAAACCATTCAAGTGTGAAATATgctcaaaatatttttctagaaatgctattttaataaaacacatgAAACTTCATATGCGTTAA
Protein Sequence
MALHVRRHDEKKIFKCEICSKCLRTNKGLMRHVERHTGEKPFECEECSKRFVTKGELKTHVRRHTDEKQFKCEICGKCFARSNSLIEHIKRHTGNTPFKCEICLRGFIQKRELTIHMRRHSGEKPFKCEVCSKMHTSKSELGNHMKRHTGLKSFKCDICFKFFTSSGELLVHMKHHTAEKPFQCEVCSKCFVQNDKFKIHMMRHNGDKPFKCKICPKCFVRKSDLKIHTRRHTGEKPFICEICSKCFVSNCDFKAHMKRHIGEKRFKCEICTKFFVKNSELVLHMKRHIGETEFKCEVCSKCFINNNELTTHMSRHTGEKPFKCEICPKRFFTKRGLMLHTKHHTDVKPFECKICPKCFVSDSELVIHMRRHTGEKPFNCEICSKAFISNGSLTEHMNRHTEEKPIQCDVCSKRFVQNDKFIIHMRRHTGEKPFKCEMCSKCFVSNSELGIHAKSHTGEKPFKCEICSKYFSRNAILIKHMKLHMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-