Agra003515.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000010.1:18132613-18150118[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00026 0.02 15.9 3.0 1 23 577 599 577 599 0.97 2 21 0.00032 0.025 15.6 1.2 1 20 605 624 605 627 0.94 3 21 0.00025 0.02 16.0 0.9 1 23 633 655 633 655 0.98 4 21 2e-05 0.0015 19.4 3.2 1 23 661 683 661 683 0.98 5 21 2e-05 0.0015 19.4 5.6 1 23 689 711 689 711 0.99 6 21 4.5e-05 0.0035 18.3 5.3 1 23 717 739 717 739 0.97 7 21 5.1e-06 0.00039 21.3 6.5 1 23 745 767 745 767 0.97 8 21 2.4e-06 0.00019 22.3 3.7 1 23 773 795 773 795 0.98 9 21 0.00012 0.0096 16.9 6.7 1 23 801 823 801 823 0.97 10 21 5.1e-05 0.004 18.1 5.3 1 23 829 851 829 851 0.97 11 21 7.5e-07 5.8e-05 23.9 3.0 1 23 857 879 857 879 0.98 12 21 1.1e-05 0.00081 20.3 7.7 1 23 885 907 885 907 0.98 13 21 1.3e-05 0.00097 20.1 6.9 1 23 913 935 913 935 0.98 14 21 1.1e-07 8.2e-06 26.6 2.5 1 23 941 963 941 963 0.98 15 21 7.8e-05 0.006 17.6 4.3 1 23 969 991 969 991 0.98 16 21 5.9e-07 4.6e-05 24.2 3.6 1 23 997 1019 997 1019 0.99 17 21 2.9e-05 0.0022 18.9 7.7 1 23 1025 1047 1025 1047 0.98 18 21 3.3e-06 0.00025 21.9 5.2 1 23 1053 1076 1053 1076 0.97 19 21 0.0002 0.015 16.3 0.5 1 23 1082 1104 1082 1104 0.98 20 21 5.1e-05 0.004 18.1 0.9 1 23 1114 1136 1114 1136 0.99 21 21 1.8e-06 0.00014 22.7 3.3 1 23 1142 1164 1142 1164 0.97
Sequence Information
- Coding Sequence
- ATGAACGAGCACGGGGCGCATCACGACCACCACCACCATCTGCACCATCACCAGCACCCGCACCCGCATCAGCACCAGCACCACCAGTCGGAGCCGGACGCGGAAGCGGAAGACGAGGTTGGCGGCCGTGCGTCGGCTGTCAAACGCGTTGGTTGCGCCGCGCCCCACCCCACCCCCGACCCcaccccgcccccgccccccgACCCCGCCCGATCGATCGCCACCGCCCCGAGCCGAGCCGACTGCGCGCCCCTCTCACTCCACTCCACTCTCCGCACTCCGCACTCCGCACTCCGCTCTTCGCTCTCCGCTCTCTCTCCTGCCTCCGCAGACGTAAACAAATTGTCGGACTTCTTCACACTTCAGGCTTCAGGCTTCAGCCTTCAGACGGGAAGAGACGAGACGAGACGTGACGAGACGGAGCCCGTTCGTACAGCCACCATTGTCTGCTCTGCTTCTTACCGCATTGTCGCTCCCCGCACCCCTCGCCCCACCCTCACCCTCACCCCCACCCACTCCCCGCCCATCGATAATGAAAGGACAATACAAAGCCAACACCAAATTGCTACCCCGACCACGTCGGCCACCGATCTCAGAGTCAATTCTCCCACCGTGAACTCTTCGCTACCTAACGTTGCGAAATATTTGGTATTCACAAACTTATTCCCAGGATCCGTATACGGTTCGTCAAATAAACTAGAAAATGGAAAACCCGTTCAGGAAGGTATGCTCCAGCACAATTCGACGATATTGAACGGCAATTCCGGTTTCCTATTGCAAGAGCACCCTGAGTCGGTCTTGAGGCAGATTCACGGACTGCCGACATTGGAAACGGGAGCCGGTGGGTTCTTGCAACAGATTCCTCTCGGCACAAATTTATCTCAGGGTATAGCCAACATATCCGTACCTGTAAATGCCATACCAATAGaTGTTGCGGCAGCTTTAGGAAACCACACTCAACAATCGGAATCGGAGCAATTGCAACAAAGTAATTCCAGTCAGCAACAATCTCAACAGaGTTCAAGTCAACATCAAACAATAATGGCAGGACAGCAGCTAATATCGAGTTCTTCAAATAGACCTCAAGATCATTCAAATAATCAACAACTAGAATTAACAGTTACCGAAGATGGGGTTGTAACGGTCGTGGATCATGTTACCCAGAAAGTATTGGGTACTGCCGCCACGACTACGGCCAAAGATGGACATACGGGTGGGGAAATTCAAGCTTTAACAGTCCAACAGTTGCAACAAATAGTCAATCAACAGatgttaGACAGTGTAGTCCGAATTGAACAAGCTTCCGGAGAAACTCCTAATATCATAGTGACGCATAACGCCAATGGCACTACGTCGATAGTTGCGAGTAGTTCGCAAGGTTCCACTATTGTTAAAGATGATAAAGCTAAAATTTTAGGTCAGTTCAGTATACCAGAAATCAAAACAGAAGGAAAACTCGATCTCAAGATCGGTCAGATGATGGATGTAAAAACCGCCGATGGATCTGTCGTTAAGATAGCGACTGCCCTCGGAGATCAGGATATTCAGAGCATGTACAAAGTGAGCGCTGAAGACCTGTCCCAATTGCTAGCATATCATGAAGTATTCGGAAAACTGAATTCAGAAGCAAGTGCACCGAAGGTCATGTCGGAATCTGAAGCCGAAGCTGGAACCAGCAATGTATCCGAACCAGATAGTAGTCCTCCGTCTGTCGGTTCTGCAGGACCTCACTCTTGTGAACTGTGTGGAAAAATGTTTCAATTCCGATATCAACTAATTGTTCATAGGAGATATCATGCAGAAAAGAAGCCTTTTACTTGTCAAGTGTGTGGTCAAGCATTTACTTCAGCCGAAGACTTATCTAGGCATGGAAAATGCCATTTAGGAGGTTCTATGTTCACTTGTGTCATATGTTTCCATGTATTTGCCAATGCACCTAGTCTTGATAGACATATGAAACGCCATTCCCAAGATAAACCTTATTCGTGTAATACATGCCAAAAGTCCTTTGCTCGTAGAGAACATTTAGATACTCACGTTCGAAGTCATACAGGCGAAACTCCGTATAGATGTCAATATTGTTCTAAAACGTTTACACGTAAAGAACATATGGTAAATCATGTAAGAAAGCATACAGGAGAAACGCCCCATAGATgtgatatatgtaaaaaatcatttacaaGAAAGGAACATTTTATGAATCACGTTATGTGGCATACagGCGAAACTCCACATCATTGCGAAATATGCGGAAAGAAATATACCCGTAAAGAGCATCTGGCTAACCACATGCGCTCGCACACTAACGATACACCATTTCGATGTGAGATTTGCACCAAGTCTTTTACAAGAAAAGAGCACTTCACCAATCACATCATGTGGCACACCGGTGAAACTCCACACCGGTGTGATTTTTGCTCCAAAACTTTCACCCGTAAAGAGCACTTATTAAATCATGTGCGGCAACACACAGGTGAATCGCCCCATCGGTGCGCGTACTGCTCCAAGTCGTTCACCAGGCGGGAGCATCTCGTCAACCACGTACGGCAACACACGGGAGAGACACCTTTCCGCTGTACCTATTGCCCAAAAGCTTTCACCAGAAAAGATCATTTggtgAATCATGTGCGACAACACACGGGGGAGTCTCCACACAAGTGCACTTATTGTTCTAAGTCGTTCACTCGCAAAGAGCACCTCACGAACCACGTACGTCAACACACCGGGGAGTCTCCGCACCGATGTGCCTACTGCTCAAAGTCCTTCACCAGAAAAGAGCATCTCACCAATCACGTCAGGAAACACACGGGAGAGACTCCGTACGCGTGCAGCTACTGTCCGAAAGCGTTCAGCAGAAAGGAACATTTGACGAACCATATCAGGAAGCATACGGGCGAGACGCCGTACAGCTGTGCATACTGCTTGAAGTACTTCAGCCGAAAGGAACATTTAAACAATCACGTCAGGAAACATACGGGAGAGTCCCCATACACTTGCACCTACTGCTCCAAGGCGTTCACCAGGAAAGAGCATCTAAACAATCACGTCAGAATACACACCGGTGAATCGCCGCATCGATGCGAGTTCTGCCAGAAAACATTCACCAGGAAGGAACACTTGACGAACCACTTGCGGCAGCACACGGGCGAGACACCTCACCGATGCAACGTCTGCAACAAACCCTTCACAAGAAAAGAACACCTGATCAACCATATGCAACGATTTCATACCGGTGAACGTCCTTTTTCATGCCTCGAGTGCGGCAAATCTTTCCCTCTCAAAGGTAATCTTATATTCCATCAGCGCTCACATAATAAGGGTGTACTGGCTGCACGTCCTTACCGTTGCGATCTCTGTCCGAAGGATTTTATTGGAAAAGGACATTTGGCTTCGCACAGACGTTCACATACTGGAGAGAAACCCCATGCGTGTGAACACTGTGGAAAGACCTTTGTCGAAAAGGCCAATATGTCTAGGCATATGCGAACACACGAACTTGAGGAAGCCAGAGGTGGTAGTGTGATCGGTGAAGACGGCGATTCAACTCCGACACCGACTCCGATCACTCCAACGGCGCCAAGCGGTGCAAATGCTACCCAGCAAAATATGCCCATGATGCATATGACAGGAcaaGTGATTTCTGAAGGTGCTCAAGGACAAAGAACATTGGGTGTCCTTCATCATCAGGGTCAACAGCAATCATTGCCACACCATCCGGTGTTAaggatttaa
- Protein Sequence
- MNEHGAHHDHHHHLHHHQHPHPHQHQHHQSEPDAEAEDEVGGRASAVKRVGCAAPHPTPDPTPPPPPDPARSIATAPSRADCAPLSLHSTLRTPHSALRSSLSALSPASADVNKLSDFFTLQASGFSLQTGRDETRRDETEPVRTATIVCSASYRIVAPRTPRPTLTLTPTHSPPIDNERTIQSQHQIATPTTSATDLRVNSPTVNSSLPNVAKYLVFTNLFPGSVYGSSNKLENGKPVQEGMLQHNSTILNGNSGFLLQEHPESVLRQIHGLPTLETGAGGFLQQIPLGTNLSQGIANISVPVNAIPIDVAAALGNHTQQSESEQLQQSNSSQQQSQQSSSQHQTIMAGQQLISSSSNRPQDHSNNQQLELTVTEDGVVTVVDHVTQKVLGTAATTTAKDGHTGGEIQALTVQQLQQIVNQQMLDSVVRIEQASGETPNIIVTHNANGTTSIVASSSQGSTIVKDDKAKILGQFSIPEIKTEGKLDLKIGQMMDVKTADGSVVKIATALGDQDIQSMYKVSAEDLSQLLAYHEVFGKLNSEASAPKVMSESEAEAGTSNVSEPDSSPPSVGSAGPHSCELCGKMFQFRYQLIVHRRYHAEKKPFTCQVCGQAFTSAEDLSRHGKCHLGGSMFTCVICFHVFANAPSLDRHMKRHSQDKPYSCNTCQKSFARREHLDTHVRSHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCEICGKKYTRKEHLANHMRSHTNDTPFRCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRREHLVNHVRQHTGETPFRCTYCPKAFTRKDHLVNHVRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGESPHRCAYCSKSFTRKEHLTNHVRKHTGETPYACSYCPKAFSRKEHLTNHIRKHTGETPYSCAYCLKYFSRKEHLNNHVRKHTGESPYTCTYCSKAFTRKEHLNNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHRCNVCNKPFTRKEHLINHMQRFHTGERPFSCLECGKSFPLKGNLIFHQRSHNKGVLAARPYRCDLCPKDFIGKGHLASHRRSHTGEKPHACEHCGKTFVEKANMSRHMRTHELEEARGGSVIGEDGDSTPTPTPITPTAPSGANATQQNMPMMHMTGQVISEGAQGQRTLGVLHHQGQQQSLPHHPVLRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -