Agra011160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000028.1:3540027-3549290[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 8.4e-05 0.0065 17.5 0.1 1 23 95 117 95 117 0.98
2 30 5.3e-06 0.00041 21.3 1.9 1 23 121 143 121 143 0.97
3 30 0.00023 0.018 16.1 0.6 1 23 161 183 161 183 0.98
4 30 0.0094 0.73 11.0 2.3 1 23 189 211 189 211 0.96
5 30 0.049 3.8 8.8 2.5 1 23 217 239 217 239 0.98
6 30 6.3e-05 0.0049 17.9 2.6 1 23 245 267 245 267 0.97
7 30 0.00027 0.021 15.9 1.0 1 23 273 295 273 295 0.98
8 30 0.0017 0.13 13.4 1.3 1 23 301 323 301 323 0.99
9 30 0.00033 0.025 15.6 2.0 1 23 329 351 329 351 0.97
10 30 0.0022 0.17 13.0 4.1 1 23 357 379 357 379 0.98
11 30 0.0021 0.17 13.0 0.2 1 23 412 434 412 434 0.98
12 30 9.9e-06 0.00077 20.4 0.5 1 23 438 460 438 460 0.98
13 30 0.00098 0.076 14.1 3.0 1 23 502 524 502 524 0.97
14 30 0.00055 0.043 14.9 1.6 1 23 530 552 530 552 0.98
15 30 2.1e-05 0.0016 19.4 3.4 1 23 558 580 558 580 0.97
16 30 0.00023 0.018 16.1 1.5 1 23 586 608 586 608 0.98
17 30 0.016 1.3 10.3 5.1 1 23 614 636 614 636 0.98
18 30 0.0036 0.28 12.3 2.7 1 23 642 664 642 664 0.97
19 30 7.7e-05 0.006 17.6 3.7 1 23 670 692 670 692 0.98
20 30 0.00059 0.045 14.8 0.5 1 23 1215 1237 1215 1237 0.98
21 30 2.6e-05 0.002 19.1 1.2 1 23 1241 1263 1241 1263 0.98
22 30 0.00025 0.02 16.0 3.9 1 23 1281 1303 1281 1303 0.98
23 30 0.009 0.7 11.1 4.3 1 23 1309 1331 1309 1331 0.98
24 30 0.00061 0.047 14.8 1.7 1 23 1337 1359 1337 1359 0.98
25 30 0.035 2.7 9.2 6.2 1 23 1365 1387 1365 1387 0.97
26 30 0.00028 0.022 15.8 1.8 1 23 1393 1415 1393 1415 0.98
27 30 0.016 1.3 10.3 5.1 1 23 1421 1443 1421 1443 0.98
28 30 0.0036 0.28 12.3 2.7 1 23 1449 1471 1449 1471 0.97
29 30 4e-05 0.0031 18.5 3.4 1 23 1477 1499 1477 1499 0.98
30 30 9.2e-06 0.00071 20.5 1.0 1 23 1505 1527 1505 1527 0.98

Sequence Information

Coding Sequence
ATGGATACAACAAAAGCAACTGCCGGTGACGTGGACAGAATCATTAGTGTTTCCAACAGCAATTCCTCTTCAAAAAACCCCACCGATGATTACAACAAGAGGGCAAGGCGCTCGATTTCTGTAATCGTAAACAATCTAATAAAGATGGATCCAAAACCAGATGCAAATGCGAATGTTAATACCAATGCGAATATTGACAGTCGCAATTTAgatgaaaatattcaaaagAACGAGATCAAACCAGTATCAAATCTCTATCTCAAACAGAATTTGAAAACGTTCTtcgaatgtgacatttgctctGAGGTCTTTTTCACCCCGCCTCTGCTAATCAAACATCTAAAAGTCCATTCGGCAAACTTCATATGTGATCATTGCGGCGAAGTATTTTACCAGAAGCGTCTGCTGATTCGTCACATGACCAAGCACAGCGATGAAAAGACGACCGGCATACACGGGATAACACCAACGAAACCCCCCtacatttgtaaatattgtacaaagtcATTCTCTATCAAAGCTGAAATGATAGcacataaaaaaattcacaaagGTGAAAAGCGACACGCATGCAGCTTATGTCCAAGAGCTTTTTTACACAAGAGTGGACTGGAAAAGCATTTCCGGGTTCATACAGGTGTCCGACCGTATTCGTGTGACGTTTGCTACAAATCTTTCGCCTGTAAAAACAACATGAAGGAGCACGCTAAGATCCACACTGGAATCAGACCGCACAAGTGCACCATGTGCTCCAAAGCCTATGTCGGTAAAAGCGATCTTAAAAAACACATGCTGTACCACTCGGGCACGCGCTCACACAAATGCGAAGTATGCCAGAAGGAGTACGTCCTGAAGAGTGCTTACAACGCCCACATAAATACCCATTTAGAAGAAAAGCTGtacaaatgtgagatttgtttaAAGTCTTTCGGCCTTCGGAATGTCTTCAACAAACACATAAAGACACACCTCGACGTGAAACCGCACAAGTGCGAGATTTGCGGCAAAGGTTTCTTTCTAAAGGAGAATTATAACAATCACGTGAAACTGCACTCTGGAGATAAGTCACACAAATGCCAGATATGTTCGAAATCGTTTCTGCTTAAAAACTATCTGAACCGACACATGAAGATTCATACTGAAGAAAAACGATACCAGTGTGAGgaAGAACCAATATCCGATTGTGACTACCTCAAACAAAATCTACATAAGATAAAAACTTCGCAGACATTTTTTGAATGCGAAATTTGCTCTGAAGTGTTTTTTACCAAGCCTTTCTTTGCCAAACACTTAATAGTACATTCGGCCAACTTCATTTGCGATTATTGTGGAGAAATATACTATCAAAAGTATCTTCTCATAAGACATCTAAACACTCACAAAAACGAACGCATACTTCTTCCGGTTGAAAAGCTGCCTTACGAATGTATACCGTGTGTGAATCCTTTTTACAGCAAAGCCGATATGATCTTGCACAAGCAAATTTACCAGGGAGAAAAGCGACACATGTGCAACTTATGTCCGAAAGCTTTCCTACACAAAAGCGGTCTGAACAAACATTTGAAAGTTCACACAGGCTATCGGCCATTCGTGTGCTCTGTGTGTTCAAAAGCTTTCAGCTGCAAGAGCAATTTGAACGAGCATGCAAAGATCCACACCGGGATCAAGCCCCACAAGTGCACGGTGTGTTCCAAGGCATTCGTTTTCCGTAGTGATCTCAAGAAACACATGCTGTACCACTTGGACACGCGATCGCACAAATGCGAAATATGCTCAAAAGAGTTCGTGTTGAAGAGCGTTTATAACGCTCACATGAACACCCATCTAGAAGACAAACCGCACAAGTGCGAAATTTGTCTCAAGTGTTTCGGCCTGCGGAGCGTTTACAACAAACACATAAAGACGCATCTCAAGGAAAGGCCGCACAAGTGCGAGGTCTGCTCCAAGGCGTTCTTCCTCAAAGAGAACTACAACAACCACGTGAAACTGCACACCGGAGAAAAGTCGCACAAGTGCCAGCTGTGCTCAAAATCGTTCCCACTCAAAAATTATTTGAACCGACACATGAAAGTTCACAATACAGTTTCTGTAATCAATCAAAATAAAGATTTAAAGCCAATCGAAAATGAAAATACGCAAACAAAACCAATAGAGGAAAATGTCGTAAAGCCTATCGAAAATGAAAACAAGCAAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAgccaatcaaaaatgaaaataatcaaaaagaaTCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAATGAATCAATAGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAACCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAgccaatcaaaaatgaaaataatcaaaaagaaTCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAgccaatcaaaaatgaaaataatcaaaaagaaTCAATGGAGGAAAACTTCATAAACCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAAGAAAACTTCATAAAgccaatcaaaaataaaaataagcaaaaaGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCAATCAAGAATGATAATAAGCAAAAAGAATCAATGGAGGAAAACTTTATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAGTTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCgatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCaatcaaaaatgataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGccaatcaaaaattataataagcaAAAAGAATCAATGGAGGAAAACTTCATAAAGCCGATCAAAAATGATAATGAGCAAAAAGAATCAATAGAGGAAAACTTCATAAAGCCcatcaaaaatgataataagcaAAAAGAATCAATAGAAGAAAATGTCATAAAGaaaGAGCTAATCTTCAATTCCGACTACCTCAAACAAAATTTATACGAGATTCCGACTTCAAAGGCATTTTTCGAATGCTACATGTGCTCCGAGGTATTTTTTACCAAGTCGTCCTTGGGCATACATTTGAAAGTACATTCAGCCAACTTCATATGCGACCATTGTGGAGAAATATACTATCAAAAGTATCTTCTCATAAGACATATAACCACCCACAAGAATGAACatgtgtttattaaatataaaccgtCGATCACAAAGCTACTGTACAAATGTAAACACTGTGCGAAGTCTTTTACCAACAAAGTCGACATGATCTCGCACAAGCAAAGTCACAAGGGAGAGAAACGACACAAGTGCAACTTGTGTCTGAAAGCTTTTCTGCATAAGAGTGGTCTGAACAAACACCTGAAGGTTCACACAGGCTGTCGGCCGTTCGTGTGCTCGGTGTGCTCGAAAGCCTTCACGTGCAAGAGCAATTTGAACGAGCATGCGAAGATTCACACGGGGATCAGACCACACAAGTGCACGCAGTGCTCCAAAGCGTACATCTGCCGGAGTGATCTCAAGAAGCACATGCTGTATCATTCGGATACGCGATCGCACAAATGCGAAATATGCTCGAAGGAGTTTGTGCTGAAGAGTGTTTTCAACGTGCATATGAACACCCATCTCGAGGAGAAACCGCACAAGTGCGAAATTTGTCTCAAGTGTTTCGGCCTGCGGAGCGTTTACAACAAACACATAAAGACGCACCTCGAGGAAAGGCCGCACAAGTGCGAGGTCTGCTCCAAGGCGTTCTTCCTCAAAGAGAACTACAACAACCACGTGAAACTGCACACCGGGGAAAAGTCGCACAAGTGCCAGGTGTGCTCAAAGTCGTTCCCGCTCAAAAACTATTTGAACCGACACATGAAAATTCACAATGCGGAAAAACTGCACCAGTGCGAAATTTGCCCGAAATCGTTCGTATACCAAAGTCGTTTAGCTAATCATCTGAAAATCCACGTTGATCAGCAACTAAGTGCAGAATTTGAAAATGGGGATGTATTGTTATCGTAA
Protein Sequence
MDTTKATAGDVDRIISVSNSNSSSKNPTDDYNKRARRSISVIVNNLIKMDPKPDANANVNTNANIDSRNLDENIQKNEIKPVSNLYLKQNLKTFFECDICSEVFFTPPLLIKHLKVHSANFICDHCGEVFYQKRLLIRHMTKHSDEKTTGIHGITPTKPPYICKYCTKSFSIKAEMIAHKKIHKGEKRHACSLCPRAFLHKSGLEKHFRVHTGVRPYSCDVCYKSFACKNNMKEHAKIHTGIRPHKCTMCSKAYVGKSDLKKHMLYHSGTRSHKCEVCQKEYVLKSAYNAHINTHLEEKLYKCEICLKSFGLRNVFNKHIKTHLDVKPHKCEICGKGFFLKENYNNHVKLHSGDKSHKCQICSKSFLLKNYLNRHMKIHTEEKRYQCEEEPISDCDYLKQNLHKIKTSQTFFECEICSEVFFTKPFFAKHLIVHSANFICDYCGEIYYQKYLLIRHLNTHKNERILLPVEKLPYECIPCVNPFYSKADMILHKQIYQGEKRHMCNLCPKAFLHKSGLNKHLKVHTGYRPFVCSVCSKAFSCKSNLNEHAKIHTGIKPHKCTVCSKAFVFRSDLKKHMLYHLDTRSHKCEICSKEFVLKSVYNAHMNTHLEDKPHKCEICLKCFGLRSVYNKHIKTHLKERPHKCEVCSKAFFLKENYNNHVKLHTGEKSHKCQLCSKSFPLKNYLNRHMKVHNTVSVINQNKDLKPIENENTQTKPIEENVVKPIENENKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNENNQKESMEENFIKPIKNDNKQNESIEENFIKPIKNDNKQKESMEENFINPIKNDNKQKESMEENFIKPIKNENNQKESMEENFIKPIKNDNKQKESMEENFIKPIKNENNQKESMEENFINPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNKNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEESFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNDNKQKESMEENFIKPIKNYNKQKESMEENFIKPIKNDNEQKESIEENFIKPIKNDNKQKESIEENVIKKELIFNSDYLKQNLYEIPTSKAFFECYMCSEVFFTKSSLGIHLKVHSANFICDHCGEIYYQKYLLIRHITTHKNEHVFIKYKPSITKLLYKCKHCAKSFTNKVDMISHKQSHKGEKRHKCNLCLKAFLHKSGLNKHLKVHTGCRPFVCSVCSKAFTCKSNLNEHAKIHTGIRPHKCTQCSKAYICRSDLKKHMLYHSDTRSHKCEICSKEFVLKSVFNVHMNTHLEEKPHKCEICLKCFGLRSVYNKHIKTHLEERPHKCEVCSKAFFLKENYNNHVKLHTGEKSHKCQVCSKSFPLKNYLNRHMKIHNAEKLHQCEICPKSFVYQSRLANHLKIHVDQQLSAEFENGDVLLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-