Agra002753.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- -
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000010.1:3125922-3127887[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2e-07 1.5e-05 25.7 0.7 1 23 111 133 111 133 0.98 2 18 4.7e-07 3.6e-05 24.6 1.3 1 23 139 161 139 161 0.98 3 18 9.4e-07 7.3e-05 23.6 2.5 1 23 167 189 167 189 0.98 4 18 4.3e-06 0.00033 21.5 1.2 1 23 195 217 195 217 0.98 5 18 0.00058 0.045 14.8 4.6 1 20 223 242 223 245 0.94 6 18 2.8e-06 0.00022 22.1 0.6 1 23 251 273 251 273 0.98 7 18 1.6e-05 0.0012 19.8 0.4 1 23 279 301 279 301 0.98 8 18 3.6e-05 0.0028 18.6 0.3 1 23 307 329 307 329 0.97 9 18 5.8e-05 0.0045 18.0 0.3 1 23 335 357 335 357 0.97 10 18 4.7e-05 0.0037 18.3 5.3 1 23 364 386 364 386 0.98 11 18 1.2e-06 9.2e-05 23.3 0.6 1 23 392 414 392 414 0.98 12 18 3.1e-08 2.4e-06 28.3 1.3 1 23 420 442 420 442 0.98 13 18 1.3e-05 0.001 20.0 2.6 1 23 448 470 448 470 0.98 14 18 8.7e-06 0.00067 20.6 1.8 2 23 477 498 476 498 0.98 15 18 1.5e-06 0.00012 23.0 1.9 1 23 504 526 504 526 0.97 16 18 1.3e-05 0.001 20.0 1.8 1 23 532 554 532 554 0.97 17 18 2.9e-06 0.00022 22.1 1.3 1 23 560 582 560 582 0.96 18 18 7.8e-05 0.006 17.6 3.7 1 23 588 610 588 610 0.99
Sequence Information
- Coding Sequence
- ATGGCGTGTCGACTTTGTCTCTCTTTTACACCAGTAGAGTCTTCCATCTCCATTTATGACAATCCTCGTCCTCTGGAGCAACAAATCTGGAATTGCTGTCATATACTTGTGGACAAGAATGATTTGTTgccaaatacaatatgtatgtcgtGTGAATGTAACCTGAAATCACTATGCAACTTTAGAAGAACATGCGCTCACAGTGATGAAATACGAAGACGGAAATTGACCGAATGCACAGATTTAAAAACAGAAGAAGTTATATTAGACGATTTAGTTTGGGAGAATGAGCCTCGTAGCGATTCGTCCTCAAGAGCTCAAAAACAACCATTTGAATGTAATGTTTGCTTTAAGCCATTTATTCAGAAATCCCAGCTGACAAGACATATGCTTGTCCAcactaaattaaaatcatatcaGTGTGGCGAATGTACAAAATCCTTCACACAAAAGTCATCCTTAATAACACACCAGTATATACACACTGGTTTAAAACCGTTCAAATGCGACATATGCTTAAAATGTTTCAATCGAAAATCAGAACTAATTGCCCATATGACCTCTCACACTGGCGTAAGACCATTTCAATGCGAAGTTTGCTCTAGATCGTTTACATATAAATCATCCTTAGTAACACATCGGCTAGTTCACACTGGCTTAAAACCGttcaagtgtgacatttgtttccGATCGTTCACTCATAAAACATCTTTATTAAAACATCATCCTATTCACATCGCGCTAAAACCATTCACGTGCGATGTCTGCTTAAAAACATTCAAACGAAAAACTGATTTAAATGCCCACTTGATCATTCACATTCAGTTTAGACAATTCCAGTGTGATATCTGTTCAAAGTTGTTCAAACGAAAATCCGACTTGATACCCCATATGGCTACCCACACTGGGTTAAAACCATTCAATTGTGAAATCTGCCTGAAACCGTTTAAACGACGATCCGACGTAGTGGCCCATATGAGCTCTCACACCAAGTTAAAACCATTCATTTGCGAAATATGCTTTAAAGCATTTCAATATAAATCATCTTTAGTAGCGCATCAACAAGCTCACATTGGGCTCTCAAAAGCATTCACATGCGATGTCTGCCTGAAAACGTTCAAACATAAATCGTCTTTGGTAATACATCAACACACTCACACTGGGTTAAAACCGTTCAAGTGTGACGCCTGTCCAAAGTCGTTTAAACGAAACTCGGAATTAATAGCTCACACGACGACTCACACCGAGGTAAAACCATTCACGTGTGACATTTGCCAAAAATCATTCAAACGAAAATCCGAATTGATGGCCCACATGTCCAGTCACACTGGTTTgaaaccgttcaaatgtgacatttgtctaaAAACATTCACATACAAATCGTCCTTAGTAATACACCAGCAcgttcatactgggataaaaccaaaCAAGTGTGACATCTGTTTCAAATCATTCATCAAAAAATCTCGTCTGACGAGACACATGCTCATTCATACCGATTTAAAACCGCACATGTGTAACATATGCTTCAAGTCATTCATCCAAAAGTCTCAATTAATGGCTCACATGACCATTCACACCGGCTTGAAACCGCACAAGTGTGACCTGTGCTTAAAATCGTTTACCCAAAAGTCGTCTCTAGTAGCACATCGACTTATTCACACCGGGTTAAAACCGTTCAAGTGTGACTTTTGCTCAAAAACATTCACAAATAGCAGCTACTTAGCCAGACATGTGGTTATTCATAGTGAGGTAAAACCATTCAAGTGCAACTTTTGCATAAAGTCATTCCCAAGCAAGTCCAAATTAACGAAACATACGAATACTCATACAGATGTAGGACAACCTAGACATGACTTCAgttcaaaatcattcaaacAAGAACCTTCGTAA
- Protein Sequence
- MACRLCLSFTPVESSISIYDNPRPLEQQIWNCCHILVDKNDLLPNTICMSCECNLKSLCNFRRTCAHSDEIRRRKLTECTDLKTEEVILDDLVWENEPRSDSSSRAQKQPFECNVCFKPFIQKSQLTRHMLVHTKLKSYQCGECTKSFTQKSSLITHQYIHTGLKPFKCDICLKCFNRKSELIAHMTSHTGVRPFQCEVCSRSFTYKSSLVTHRLVHTGLKPFKCDICFRSFTHKTSLLKHHPIHIALKPFTCDVCLKTFKRKTDLNAHLIIHIQFRQFQCDICSKLFKRKSDLIPHMATHTGLKPFNCEICLKPFKRRSDVVAHMSSHTKLKPFICEICFKAFQYKSSLVAHQQAHIGLSKAFTCDVCLKTFKHKSSLVIHQHTHTGLKPFKCDACPKSFKRNSELIAHTTTHTEVKPFTCDICQKSFKRKSELMAHMSSHTGLKPFKCDICLKTFTYKSSLVIHQHVHTGIKPNKCDICFKSFIKKSRLTRHMLIHTDLKPHMCNICFKSFIQKSQLMAHMTIHTGLKPHKCDLCLKSFTQKSSLVAHRLIHTGLKPFKCDFCSKTFTNSSYLARHVVIHSEVKPFKCNFCIKSFPSKSKLTKHTNTHTDVGQPRHDFSSKSFKQEPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -