Agra011527.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctopsyche grandis
Gene Symbol
-
Assembly
GCA_029955255.1
Location
JARCGT010000029.1:6514317-6519764[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 33 0.00046 0.036 15.1 0.8 1 23 203 225 203 225 0.99
2 33 2.3e-05 0.0018 19.2 2.1 1 23 231 253 231 253 0.99
3 33 0.00028 0.021 15.8 7.3 1 23 259 281 259 281 0.97
4 33 1.6e-05 0.0012 19.8 0.3 1 23 287 309 287 309 0.98
5 33 5.4e-05 0.0042 18.1 1.1 1 23 316 338 316 338 0.99
6 33 0.0013 0.1 13.7 6.5 1 23 344 366 344 366 0.97
7 33 9.5e-05 0.0073 17.3 1.1 1 23 372 394 372 394 0.96
8 33 9.9e-05 0.0077 17.2 2.1 1 23 401 423 401 423 0.99
9 33 3.9e-05 0.003 18.5 3.8 1 23 429 451 429 451 0.96
10 33 1.1e-05 0.00081 20.3 1.5 1 23 457 479 457 479 0.97
11 33 3.1e-05 0.0024 18.8 2.7 1 23 486 508 486 508 0.99
12 33 0.0048 0.38 11.9 2.7 1 23 514 536 514 536 0.97
13 33 0.00062 0.048 14.7 1.3 1 23 542 564 542 564 0.98
14 33 8.4e-05 0.0065 17.5 4.0 1 23 569 591 569 591 0.99
15 33 0.23 18 6.7 2.7 1 23 597 619 597 619 0.97
16 33 0.00054 0.042 14.9 2.5 1 23 625 647 625 647 0.97
17 33 6.2e-07 4.8e-05 24.2 0.6 1 23 651 673 651 673 0.99
18 33 8.8e-05 0.0068 17.4 1.5 1 23 679 701 679 701 0.98
19 33 7.2e-05 0.0056 17.7 3.4 1 23 707 729 707 729 0.98
20 33 0.026 2 9.7 0.9 1 23 735 757 735 757 0.95
21 33 3.5e-05 0.0027 18.7 2.1 1 23 763 785 763 785 0.99
22 33 0.00047 0.036 15.1 5.7 1 23 791 813 791 813 0.98
23 33 0.00037 0.029 15.4 5.4 1 23 819 841 819 841 0.98
24 33 2.2e-05 0.0017 19.3 0.5 2 23 848 869 847 869 0.98
25 33 0.003 0.23 12.6 2.0 1 23 875 897 875 897 0.98
26 33 3.3e-05 0.0025 18.8 1.8 1 23 903 925 903 925 0.98
27 33 0.00023 0.018 16.1 6.3 1 23 939 961 939 961 0.99
28 33 1.3e-06 9.8e-05 23.2 4.4 1 23 967 989 967 989 0.99
29 33 6.3e-06 0.00049 21.0 2.6 1 23 995 1017 995 1017 0.98
30 33 0.0033 0.25 12.5 7.4 1 23 1023 1045 1023 1045 0.97
31 33 0.00051 0.04 15.0 0.9 1 23 1051 1073 1051 1073 0.98
32 33 0.0045 0.35 12.0 5.8 1 23 1078 1100 1078 1100 0.97
33 33 0.00026 0.02 15.9 0.8 1 23 1106 1128 1106 1128 0.98

Sequence Information

Coding Sequence
ATGGAGTGTAGACTCTGCCTCTGTGCTGCAACAGAAGCGTCTTCAGTCTTCATCCACGATGATTCTGATCAATTGGTGCAGCGCATTTGGTCCTGCTGTCAGCTAAACGTTGAGAGGGACGACAGATTGCCGGATACGATATGCCTTGGGTGTAAGACTAACTTGGAATTGTTCGACGGTTTTAAAAGCATGTGTGTTCGGAATGATGGAACTCTAAGACAGAGATTGCCCCAGTTTTTGGCTATCAAAAAGGAAGAAATCATACTGCAAGATTTAATGTGGGAGGATGACTTTAATGCTAATTCGTCACCAAATGTCCACAAACCCACTGCACATGTTGATAGTAATGAATGGAAATCAAACGACCCAGAAGACAATGATTCTAGTAAACACAcctttttaatagaaaatgatcCCCTCGTCGAAAATTGGCAgGTGGATGGAGGTCGTGCTTCATTATACAATGACGCAGAcgattttaaaatagatattaaaatTCCACCGCAAGAACATCCATCAAAGAAAAGTTCAAACGACATGCATTCCGAGTATTCCGGAAGTGCGTCCAAGTCGAAATTAAAACAGCGGGGAAAACTACACGCACAATACAAATGCAATACGTGCGAGGAATCATTTCTATCTCAATCCAAATTGGCCGTTCACCTGAAGTCTCACACGAGCGACAAACCTTACAAATGCGACGTTTGTTCAAAGCACTTTGCTCGCGACTACAACCTGGCAATGCACATGACGACTCACACTAAGGTCAAAAGGCATAAATGCGACATATGTTCAATGTCGTTTACTTTCAAACAACACTTGAAGAAACACATGTACTCGCACAACGGAAACGAGTCGTACGTGTGCGATGAATGCTTAAAAGCTTTCAATTCCAATAAAGATTTGGCACTACACATGAAATCTCACACTCTGACACCTAAATCGTACCGATGCGAGATCTGCTTCAAATATTTCGCCCGGGACTATAACCTGGCCATGCACATGACCACTCATAACGACGTGAAACGGTACAAATGCGAGACATGCTCCATGTCTTTTACATTCAAACAACACTTACGAAAACACACCTACTCTCACACCGGAAACGGAACACACTTCTGCGACGAATGTTTGAAAGCCTTCAACTCCAAAGACGATTTACTAGCACATATGACCTCTCACACATTGACAATCAGATCGTACAAATGTGACGTATGCTCAAAGTATTTCGCTCACGACTACAACCTGGCGATGCACATGACGACTCACAACAACGtcaaaatgtacaaatgtgagATATGTTCAACTTCGTTCACGTTCAAACAACACTTACGGAGGCACATATATGCTCATTCCGGAAACCACTTGCATACATGCGACGAATGTCTGAAAACGTTCAAATCTAAAGACGACCTGTTGGTGCATATGAAGGCTCACACTTTAGAATACAAACCGTACAAATGCGACATCTGCTTAAAATCGTTCAATCAACGGCGTACCTTCATGGCCCACATGAAATATCACAACGAGATAAAACCGCACAAATGCCAAGTCTGCTCCAAGTTGTTCAAATTGAAGATCTCCTTGCGGGAGCACATGTACGTTCACACCGGGAATAAGCTCTATCATTGCGACATATGTTTGAAATCGTTCGTCAAGAGGTCCACGATAGTGGCGCATTTGCAAACTCACAACGGGATCGAATACAAGTGTGAAGTCTGCTTGAAGACGTTTTGTAAAGAGTATAACTTGAGACTGCACACGAGGATTCACACCGGGTCGAAGCTGCACCAGTGTGAAGTCTGTCAAAGATCGTTCCTGCTGCTGCGGCGCTTGAAAGAACACATGTACACTCACACTTCGGAGAAACCGTTCAATTGTAAAATGTGCTCCAAGTCGTTCAATACCAAGAGCGTGTTTGATGTACATTTGAAATCACACACTGGACAGTTCAAATGCGAAGTGTGCTCCAAATCGTTCGCCTCACAGTCTGTCTTGACGATACACATGAGGAGTCACACCGGAATCGATCCGTACAGATGTCAAATCTGTCGAAAGTCGTTCGTGCTCGAACAGAGCTTAGAAAAGCACATGCAATTCCACAAAGAGAACAAGtttcataaatgcgaaattTGTTCTAAACATTTAGTGTCTAAAGAAAATTTAGAGTTGCATATGAAAACGCATGCTTCGGATTACACGTTCAAGTGCGACATATGTTCGAAATCGTTCTTGAAAAAGCTCGGCTTGGATGAACACATGTACAGTCACACCGGAGAAAAACCATACACTTGCAAAGTCTGCTCGAAATCGTTTGCTCGAAGGTCCGTATTTACGATGCACGTGAAAACTCACTCCGAGACGAAACTGCACAAATGCAAAGTCTGCCTGAAGACGTTCACACGACTGTTCAGCCTGACGGAACACATGCACATACACACCGGGAACAAACTGCACAAATGTGAGCTGTGTATAAAGTCGTTTTCACATAAATCTACCCTTGTGCAGCATATGAAGTCTCACACTAACGAAAATGTGAaccagtgtgaaatttgtttcaaGTCTTACGCTCTAAAATCCGGTTTGATAACGCACATGAGGACTCATCCTGAAGTCGAATCGTACAAGTGCGAGTTTTGTCCGAAGACGTTTGTGCTCAAAGATCGCTTCGACGAGCATATGAAATTTCACAAAGAGGACAAGtttcataaatgcgaaattTGCTCGAGAAAACTCATCTCTAAAGCTAATTTAGAATCGCATATGAAAACGCACACCGCGTCACATTTGAGGTCTCCGTTCGAACCGAGGATATACAAGTGCGAAATCTGCTCCAGGACATTCACACGGCACTATCGCTTAGAAGAGCACATGCACCGGCACACCGGGAACAAGCTGTACAAGTGTGACCTCTGCACCAAATCGTTCTCTCACAAATCGTCCTTTGCCGTGCATATGAAAACGCACACCGGGGTAAAACCGCACAAATGCGAAATCTGCTCCAAGTCGTACTATCTGAAGTCGTATCTCATTGCACACATGAGGACTCACAACGTGGACGAAACGCACAAATGCGAAGTGTGTCGAAAGTCGTTCGTGCACAAGCACCGCTTAGAGGAACACATGCAGTTTCACACGGAGAACAAGTTCCACAAGTGCGAAGTTTGTTCGAAAGAGCTCATCTCTGAATACAACTTGAGGTTGCACATGGAATCGCACTCTGCTGTGAAACACCAGTGCGAAATCTGCCTCAGGTCGTTCAAAAGGAAGTTCCGGCTGGAGGAACACATGCATTATCACAACGGGATCAAACCCTATAACTGCGACAACTGTTTGAAATCCTACGGTAGCAAAAAGTCCCTTGCCATACATATGAAATCCCACGTTAGAATGTGA
Protein Sequence
MECRLCLCAATEASSVFIHDDSDQLVQRIWSCCQLNVERDDRLPDTICLGCKTNLELFDGFKSMCVRNDGTLRQRLPQFLAIKKEEIILQDLMWEDDFNANSSPNVHKPTAHVDSNEWKSNDPEDNDSSKHTFLIENDPLVENWQVDGGRASLYNDADDFKIDIKIPPQEHPSKKSSNDMHSEYSGSASKSKLKQRGKLHAQYKCNTCEESFLSQSKLAVHLKSHTSDKPYKCDVCSKHFARDYNLAMHMTTHTKVKRHKCDICSMSFTFKQHLKKHMYSHNGNESYVCDECLKAFNSNKDLALHMKSHTLTPKSYRCEICFKYFARDYNLAMHMTTHNDVKRYKCETCSMSFTFKQHLRKHTYSHTGNGTHFCDECLKAFNSKDDLLAHMTSHTLTIRSYKCDVCSKYFAHDYNLAMHMTTHNNVKMYKCEICSTSFTFKQHLRRHIYAHSGNHLHTCDECLKTFKSKDDLLVHMKAHTLEYKPYKCDICLKSFNQRRTFMAHMKYHNEIKPHKCQVCSKLFKLKISLREHMYVHTGNKLYHCDICLKSFVKRSTIVAHLQTHNGIEYKCEVCLKTFCKEYNLRLHTRIHTGSKLHQCEVCQRSFLLLRRLKEHMYTHTSEKPFNCKMCSKSFNTKSVFDVHLKSHTGQFKCEVCSKSFASQSVLTIHMRSHTGIDPYRCQICRKSFVLEQSLEKHMQFHKENKFHKCEICSKHLVSKENLELHMKTHASDYTFKCDICSKSFLKKLGLDEHMYSHTGEKPYTCKVCSKSFARRSVFTMHVKTHSETKLHKCKVCLKTFTRLFSLTEHMHIHTGNKLHKCELCIKSFSHKSTLVQHMKSHTNENVNQCEICFKSYALKSGLITHMRTHPEVESYKCEFCPKTFVLKDRFDEHMKFHKEDKFHKCEICSRKLISKANLESHMKTHTASHLRSPFEPRIYKCEICSRTFTRHYRLEEHMHRHTGNKLYKCDLCTKSFSHKSSFAVHMKTHTGVKPHKCEICSKSYYLKSYLIAHMRTHNVDETHKCEVCRKSFVHKHRLEEHMQFHTENKFHKCEVCSKELISEYNLRLHMESHSAVKHQCEICLRSFKRKFRLEEHMHYHNGIKPYNCDNCLKSYGSKKSLAIHMKSHVRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-