Agra011699.1
Basic Information
- Insect
- Arctopsyche grandis
- Gene Symbol
- bab1
- Assembly
- GCA_029955255.1
- Location
- JARCGT010000029.1:9647942-9650630[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-13 7.6e-10 39.0 0.0 1 45 317 361 317 361 0.94
Sequence Information
- Coding Sequence
- ATGGGCAGCAGCGAAGGTCAAACGTATTGTCTGCGATGGAACAACCACAAGACGAACCTCGTCGAGATCTTGGACATCCTCATCAAGATGGAGTACTACGTAGACTGCACGATAGTCGTCGACGAGCACGTGCAGTTCAAAGCGCATCGCGTAATCCTGGCAGCTAACTCGCCCTACTTCCAGACGATCCTGATGGACGTGCCCATGGACCACTGCAGCATCCTGTTCCCCGGCGTGAAGGAGTTCGAGATGCGAGCCCTGCTCGAGTACATGTACACCGGGGAGGTGAACGTGACCCAGTCTCAGATACCCAGGATCATGAAGATCGCCGAGCAGCTCGAGGTCAAGGGCCTGTTCGACATGACCGAGCTCAGGCAGAGGTTCAAGCAGGAGGATCCTGAGAGCTTGAGGTCTCCGCTGTCCTATAACAGCTCACAGCAGCCAGCCCACAGCAGCCAGGGTGAGTCTCCTCCGGCGGCTCCCCTCTGGCCCAACTCCAATAGTTTTGGGTCTCCGCTGTACCACAGGTTACCCACGGTGTTGAGCGCGTCTTACGACACGCCCGGCGATATGAACCCCCTGAAGCGCAAAAAGTTGTCGAGCATCTCCAGTATGCTGATGTCCAGAGATACGCCCATCTTGAGGAATGTCCTCGCTCAGACCAGCGCTGCTGATTCTTCTCAGTCGGCGGCTCTCGTATGCCAACCCGTCACCCACTCCGAAAGATTGCACTCAAATGGTTCTTCACACGACTCCTTCAAGCACCAACGAACCGACGTATCAGAAGAAGCTCACTCGCCATACGCCGACAAGTCCTTCGACGACGAAAATTCGCACAGATCACTTAACCTGTCCACATCTCCCCAGAACTTTCCCAGCGACCTGAGGTGCGGCATAGCGCCATACGTACCTCAGCAGAAACCAGAATGGAAACGTTACAAACAATACACCAGAACGGACATAATGTCGGCAATCGAGTGCGTGCGCAATGGGATGAGCGCACTGCAAGCCTCGCGCAAATTCGGTGTCCCTTCGAGAACACTATACGACAAAGTTAAAAAGTTGGGCATCACCACAGGTCGACCCATGAACAGAAGCATCAAACGAGAGTCTAATGGAAGTGGGTGGGGCGGTGGGGGCGGGGGTCGTGGTGGCGACGATGATCTCCACCAAGCAGCCTCGCTCTTGGATGCTGGGTTCTTGCAGCAGGCTCTTGAAGGACGGGAGCTGGCTGCCGGTAGGGACGCTTTGCACGCCATGGCTCTGGCTGCTTGTGCTCATGCTGCACTGGCTCCACCTCGCAGTCCTGGGGTTCTCAAGTTGGCTGGCCGGGGAGCTCACTCTCCTGCCCACAGCCACAGTCCCTCTCCTCCGGCGTCTGCTCCTGCTCCCACTCCATCTCGCAATGGTCTGCATGACTCCGATGAGGACCATGTCGAAGACCTCTCATGTCGGCGGTCCGATTCGGAACCAGCCGGGGTCATCGTCACACCCATGAATCAGATCTCGGCCATCATCAAGAAGGAGGACGCTCTGCGTGACTATCAGGAAGACTCTCGGAGGAGCCTCTCTGTCGACTGTAGCGACCGCGAGTGA
- Protein Sequence
- MGSSEGQTYCLRWNNHKTNLVEILDILIKMEYYVDCTIVVDEHVQFKAHRVILAANSPYFQTILMDVPMDHCSILFPGVKEFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTELRQRFKQEDPESLRSPLSYNSSQQPAHSSQGESPPAAPLWPNSNSFGSPLYHRLPTVLSASYDTPGDMNPLKRKKLSSISSMLMSRDTPILRNVLAQTSAADSSQSAALVCQPVTHSERLHSNGSSHDSFKHQRTDVSEEAHSPYADKSFDDENSHRSLNLSTSPQNFPSDLRCGIAPYVPQQKPEWKRYKQYTRTDIMSAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSIKRESNGSGWGGGGGGRGGDDDLHQAASLLDAGFLQQALEGRELAAGRDALHAMALAACAHAALAPPRSPGVLKLAGRGAHSPAHSHSPSPPASAPAPTPSRNGLHDSDEDHVEDLSCRRSDSEPAGVIVTPMNQISAIIKKEDALRDYQEDSRRSLSVDCSDRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00158173;
- 90% Identity
- iTF_00158173;
- 80% Identity
- iTF_00158173;