Basic Information

Insect: Arctia plantaginis
Gene Symbol: Gfi1b
Assembly: None
Location: CADEBC010000555.1:551523-563960[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0028 0.18 12.4 0.7 2 23 218 239 217 239 0.97

2 6 8.1e-05 0.005 17.3 1.5 3 23 246 267 245 267 0.97

3 6 0.025 1.6 9.4 0.1 3 23 275 296 273 296 0.94

4 6 0.00011 0.0067 16.9 0.8 1 23 302 324 302 324 0.99

5 6 0.00045 0.028 14.9 1.2 2 23 331 353 330 353 0.95

6 6 0.00028 0.017 15.6 0.5 1 23 359 382 359 382 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0028	0.18	12.4	0.7	2	23	218	239	217	239	0.97
2	6	8.1e-05	0.005	17.3	1.5	3	23	246	267	245	267	0.97
3	6	0.025	1.6	9.4	0.1	3	23	275	296	273	296	0.94
4	6	0.00011	0.0067	16.9	0.8	1	23	302	324	302	324	0.99
5	6	0.00045	0.028	14.9	1.2	2	23	331	353	330	353	0.95
6	6	0.00028	0.017	15.6	0.5	1	23	359	382	359	382	0.95

Sequence Information

Coding Sequence: ATGGATCGTGTTATAACACGCACAAAACAGCTTTATGCAGTGACAGGCATTGAGATATTACCAAATGATGGTCTACCCCAGGTATTATGTACacaatgtattaaattaatagaaGACGCATTACAACTGAGACAACAGAGCTCCAAGGCAAATGATATCCTTAAGagtagaaaaaaatgtaatactgttcaaaaagatattaaaatatcatcgCAACAAGGTATTATTGCTAACCCTGATAGTTATAAGCTTAATGATATACAACAACtatcaaaaagaaaagaattagaAATTAAATCTGAAATTATTACTAAAAGGAGGGTAGAAATGAAAAGTATCCGAATTGAAGATTTTGAATCGAGTGATGATAGTGGAAGTGTGGGTGATATAATTCTAGAAGATTTGGAATCTGGTGGTGAAGAAGTGAAAGTGTGTATAGAAGATTTCGAATCTAGTGATAGCTTTGGTGCAGAAGATCTTGCTACTGTGATAGGAGAGGTGAAAGAAGATTCTAATAACTGCTATGCATACAACCAAGCAATAAAAGAGAAGCAGTTATTGGATAGAGAAAGAAGAAAAGTTGAGACAAGGGAGTTGAGGCAGAAGTTACTGGCTCTAGCTGTGACGCCATACGACCCTGGAGGTCCTATCCGCTGTTCTCTATGTAGCACAGTAGTCAGGAGTGTTCAGAATTTCAAGAACCATGCCCGAACACATTATGGTCTTCAGAATGCTTGTGAGGAGTGTGGGAAGAAGTTCATGACCCTCAGCCATGTGAGGTACCACCAGCAGCGTGTTCACGGCAGAACTAAACGTCTGGCCTGCACCCAGTGTACCTACAGGGCGGTGGACCCTCAACAGCTGCAGAACCATGAGAGAGCGAGCCACACGGGCGAGAGGCCCTTCACCTGCGACGTGTGCGGGGACTCCTTCCGGATGAGACGCAACATCGTCCAACATATGAGGAAACACTTTGGTGTTAGAAACTTACAGTGCGAGCGGTGCCCGGCCATGTTCCGGAGCCGCTCGGAGCTGTGTGGTCATCAGAGTAAAGTTCACTATCATGTATACACGTACTTCTGCTACCTGTGTGACGAAACATATAAACGTCCGGCTTCGGTGAAGAAGCATTTACTTAACGCACACGGAGTACCACGGAGTCAACAACTAAACATCAAATGTGAGAAGACTAAACGGAGaagCTGTGACAAGAGTGATTAA
Protein Sequence: MDRVITRTKQLYAVTGIEILPNDGLPQVLCTQCIKLIEDALQLRQQSSKANDILKSRKKCNTVQKDIKISSQQGIIANPDSYKLNDIQQLSKRKELEIKSEIITKRRVEMKSIRIEDFESSDDSGSVGDIILEDLESGGEEVKVCIEDFESSDSFGAEDLATVIGEVKEDSNNCYAYNQAIKEKQLLDRERRKVETRELRQKLLALAVTPYDPGGPIRCSLCSTVVRSVQNFKNHARTHYGLQNACEECGKKFMTLSHVRYHQQRVHGRTKRLACTQCTYRAVDPQQLQNHERASHTGERPFTCDVCGDSFRMRRNIVQHMRKHFGVRNLQCERCPAMFRSRSELCGHQSKVHYHVYTYFCYLCDETYKRPASVKKHLLNAHGVPRSQQLNIKCEKTKRRSCDKSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824239;
90% Identity: -
80% Identity: -