Apln018264.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctia plantaginis
Gene Symbol
-
Assembly
None
Location
CADEBC010000958.1:1262647-1282851[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.4 25 5.6 0.1 1 20 216 235 216 237 0.94
2 10 0.19 12 6.7 0.1 2 23 265 287 264 287 0.93
3 10 0.98 61 4.4 3.3 1 23 310 332 310 332 0.97
4 10 0.0007 0.043 14.3 0.8 1 23 336 358 336 358 0.98
5 10 0.0014 0.089 13.3 1.1 1 23 363 386 363 386 0.92
6 10 0.016 0.99 10.0 0.5 2 23 394 416 393 416 0.93
7 10 0.00026 0.016 15.6 6.1 1 23 423 445 423 446 0.95
8 10 0.0051 0.31 11.6 0.9 1 23 452 474 452 474 0.96
9 10 3.6e-07 2.2e-05 24.7 2.2 2 23 481 502 480 502 0.96
10 10 2.7e-05 0.0016 18.8 4.6 1 23 508 530 508 530 0.98

Sequence Information

Coding Sequence
ATGGAGACGGCAATTTTAAACGGTATGTGCCGGTGTTGTGCATCAGAGGGTGTTTATAAAGACGTTAAAACTTCTTATACATGGATGGGCGAAGAAGAAGTCTACGCCGACATGTTGCGAGAAATTTTCGCCATAAGCTTGAGTACTTCGGACAACGGCGAGGATGGTGGCATATGCGAGGTTTGCATCACACAGCTGCGTAACGCAGCCAACTTTAAGAAACAAGTACTGCATACCGAGGAGCAATTTAAGAAGCATGTCAACCACAAGCTTTTTAAACCGAGCATAGTGAAGGTGGAAGCCCTAGTGGAAGATGATAACGATTCCGATGACAACAATATGTCGGCCGAAGAGGGATATTCCGGAACAGAATTCGAAATACCAATAAAGACAGAAACGGAAGAGCCAAAACCAAGGAAACGAGCAGCAGCAGCTAAAGCAACCACATCTCGAGCAAAAAAAGCTAAGAGTGACAACGGCGAGTCATCCTCGAAACGAACGGACGAGGAAGCGCCCAAACGcagaaaaaggaaaaagaaatcGGACGAAAGCGCGACACCAGAACGCGTTGAGCACAGGGTCAACCTTACTGCCATACTACAGTACTCCAACGCTAGTCCTTTCAGGGACAAGACGATCAGAGGCTTCTCCTGCCTCTACTGCGCTAACTACTTCCCTGATATCGAAGAACTGCGAAAGCATACAGCCCAACAATCTGAAAAATCCAAAATTAACACTATCATAGATTATAAACTTAGCTATAATCCTATCAAAGTAGATATTACTAACCTTCGTTGTACAGTGTGCAATTTAGAAATGAGGGACCTCACAGATCTCAAGGACCACCTCGTCTCTGTCCACAATAAGACTATTCACAAGCATATTAAAGACATAATTCTTCCCTTTCGTTTGGAGAACGGGCACAATTTTACTTGTGTCATTTGTTCAGTAGTACACATATCCTTTAAAAATCTTTACCATCATATGAGCAGCCATTACAGAAACTACTGCTGCAAGAAGTGCGGAGCTGGATACATAACTATTGCAGCGTTAAGAAAACACGGAAAAACTCATGCCCAGGGTATATTCCCATGTGATTACTGCGATAAATCTTATACTTCTCTTACAAAGAAACGAAATCACGAAAAAGGTGTTCACACAGGAGGTTGGTTGCGAAACAAATGTCCGCATTGCCCAGAAATATTTGTTAGCTACTACGATAGGAGCGAACATCTCGTGAAAGAACACAACCAGGCTCCAGTAATATATCCTTGTAACGCCTGCAATAAgacttataaaaagaaatttgagTTGAACAGACATATCAAACATCATCACTTGCAACAAAGGAGCTATCTATGCGATAAGTGCAATGCTAAGTTCTTTTCTAAGAGAGGATTAGTAGATCATCTATCTAGACACACGGGCGGTGAGGTTTGCTCCTGTGACGTTTGCGGCAAAACGTTTTCCAGAGCTCGAACTTTGAAGGAACACATGAAAATCCATGGAGACGATAAACGATTCCAGTGCGAAATTTGTAAGAAGACCTTCATGCAGAAATGCAGCTTGAAGAGCCACGTGCGGCTGCATCAAGAcgatttagatatatttaaggAATTTGATGATGTTAAACATTTAATAGACAACAGAGAGTTGACCTTGAAACAGATTGCTGCTGAGAGCAAGCGGAAGGCGCAAGCAGAGAAAATGAAAGAACAATCTTTTGTTTAG
Protein Sequence
METAILNGMCRCCASEGVYKDVKTSYTWMGEEEVYADMLREIFAISLSTSDNGEDGGICEVCITQLRNAANFKKQVLHTEEQFKKHVNHKLFKPSIVKVEALVEDDNDSDDNNMSAEEGYSGTEFEIPIKTETEEPKPRKRAAAAKATTSRAKKAKSDNGESSSKRTDEEAPKRRKRKKKSDESATPERVEHRVNLTAILQYSNASPFRDKTIRGFSCLYCANYFPDIEELRKHTAQQSEKSKINTIIDYKLSYNPIKVDITNLRCTVCNLEMRDLTDLKDHLVSVHNKTIHKHIKDIILPFRLENGHNFTCVICSVVHISFKNLYHHMSSHYRNYCCKKCGAGYITIAALRKHGKTHAQGIFPCDYCDKSYTSLTKKRNHEKGVHTGGWLRNKCPHCPEIFVSYYDRSEHLVKEHNQAPVIYPCNACNKTYKKKFELNRHIKHHHLQQRSYLCDKCNAKFFSKRGLVDHLSRHTGGEVCSCDVCGKTFSRARTLKEHMKIHGDDKRFQCEICKKTFMQKCSLKSHVRLHQDDLDIFKEFDDVKHLIDNRELTLKQIAAESKRKAQAEKMKEQSFV