Apln008357.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000507.1:662125-678216[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.4 2.7e+02 2.4 2.5 1 23 218 240 218 240 0.86 2 17 1.7 1.1e+02 3.7 0.3 3 12 277 286 277 289 0.90 3 17 3.1 1.9e+02 2.8 3.4 1 23 297 322 297 322 0.92 4 17 0.014 0.84 10.3 1.1 3 23 340 361 339 361 0.95 5 17 0.0064 0.4 11.3 0.1 2 20 399 417 398 419 0.94 6 17 2.5 1.5e+02 3.2 0.9 1 20 424 447 424 449 0.84 7 17 9.5 5.9e+02 1.3 1.3 1 23 680 701 680 701 0.84 8 17 2.1 1.3e+02 3.4 4.4 1 23 712 734 712 734 0.95 9 17 0.00043 0.026 15.0 0.5 2 23 740 761 739 761 0.97 10 17 6.2 3.8e+02 1.9 0.3 1 19 783 800 783 804 0.74 11 17 0.012 0.73 10.4 2.0 3 23 850 870 850 870 0.95 12 17 2.1e-05 0.0013 19.1 0.6 2 23 886 907 885 907 0.97 13 17 2.2e-07 1.4e-05 25.3 1.9 1 23 913 935 913 935 0.98 14 17 6.3e-05 0.0039 17.6 0.8 1 23 940 962 940 962 0.97 15 17 0.062 3.8 8.2 0.6 3 23 970 991 969 991 0.93 16 17 0.55 34 5.2 0.8 1 19 998 1016 998 1017 0.85 17 17 3.8e-05 0.0023 18.3 1.6 3 23 1030 1051 1029 1051 0.98
Sequence Information
- Coding Sequence
- ATGTCGAAAGTTTCAAGCAAAAGGTCCAGAAAATCAAAGTTGACGTGTCGTAAATATGAAATTGAGGAAAATATGGCAGACTTCCAGAAATCGTCAACGAATAATGCGAATACAAAGCCTAAGGCAAAAGCGCCTCTCGCATCAACAACACAAACATATGACGACTTTGAAGCTCTCATTGATTCTCAAAAGAAACCTAAAGAAGTCGATCCACATAAATTAGAATTTTCCGTGACCGTAGCAGTTGAAGAGTTTGATGAAGATAGCTcggatttaattataattgaaacAAACGAACAGTCTACTGTTGAAGTAATATCTTCAGACTCGGAAACGAATGACACGGTTAAAGATGAACACACCAATAGACTGGTCTCGGTTGAAGATAAAGAATATGTAATTGATTTACCTGGAAAGTTAGAAGCAGAATTAGTCTTAGATAGAAATGAAATACTCAATGCAACAAACGAAATACTAAAAAATCCAGAGAACATTGCTGACAAAATTCTCGGTATTGAAGTTAGAAACTGTATTGGACAGTACCGCACAAGTTTCGAAGATAAATTCGAAGCTAAAATTCAAAGTGTGTTCCTTAAGTGGTTCGATTGGCAAAAATCAATCGAAATGAAATTCAGAAGCTCGCCCTTAttctataaatgttatatatgtaaaaaatcttGGTGGTATTTACACGATTTTCGAGAACATTTAAAAGGCCATGCTAAGTTTATCTTGGATTTAGAAGAATATACAACACATGAAGCAAATATTATagcttatttaaatgttaatagtaTTGTTGATACAGAATTTGAAGCAGAGGGCGGTTGTCCCAAGTGTGGTTATGAATTTGCTACGCATATATCGTCTACTAGAAAGAACTcaacatatatttgtaaagtaacTAGTTGTTACCGAATATTTTACACGTGttttgctttaaaaactcaCGAATATATGTTTCATACTACCGCCGATTTTACTGGTGAGATACTAGACGCTGGTAAACGTGTATTTTGCAAAGTTTgcagttttgttttctattcacAAAAGTCATATCAATCTCATGTGAATTTGATGCACACTGTTCGGTCAGATCTAGTTGTTCCTGTCAGGTTAAATAATTGTCCTCTGTGTAATGGGCAAATTTTATTAGGGACATATCATATTTgttcagagaaaaaaaaaaaattgcagtgtAAACTTTGCTACAGAAGTTTTCAGAGGGGTCGTGAACTTAGAGCCCATATGGCAGCCCAAAATGGTCTCTTCAAGTGTAGAATCTGTGATGAATTACTGTCAAGACGATGTGTGGAAGCCGAGCATCTGATGAAGCATACTGATAAATTTGTTATTGTGAAGAAATGTTTAATATGTAAAGATTTTACAGTATTCTTGGATCATCAGACAGCTTTTGATCATATATCTGTTCATTTGAACATGATGTATGAAGGCAGcaactacaaatatataagcAAAattctGATCCCAAAATCGTGTCTTCTTCAACATTTGGAACCTAAGATTGAAGTTAAAGAGGAACTAAGTGACATCGTCTCAGCTCCAGAATTAAAAATTGAGCAAGATATCATAGACGGTTTTGAAACTGACGCTGGTGATGAGAACAAAGTCCAAATCAAAGAAGAGATCGATATACACGAGGATTTCGAATCGGACTTCGTGAAAGAAGAAGTTTTGCTAAAAACAGAAGCGGACTTGGAAATTTCAAGAATATTCGGTGTAAAAATTGACGCGAGCGACATTGATATAAAGCAAGAAATGCAAGTTGACGAAGAATCTGAATACGAAGACGACATTATAAAACTAGATTTCCTGGACACAATGCAAGAATCCGTTGAATACTCCACGCAAGACTGTATATTAAAGGTAGAAAATACTACACAGGGAACGCAAAAAGCTCAAGAAGACATGCGAGATGACGaagaagataaacaagtcgATGAAGAATATGACCAAGAAGAAGATGATATGGAAGAGGGAAATTTGAATAGGAAGCGTAATAAAATGCCTAAGATTTATAGTTGCCGTAGATGCGGCTTTGCCGCTGCCCATAAAGAATACAAAGCTCATATTAAATCGCATtgctatgaaaaattatatgaaagaaaaatatactcATGTACAAAATGTTCAACCAATTTTGAGAAATTTAATAAGTTCATTGATCATTTTACTAAGCATAATCTCAGTCCGCTATCGTGCCCGGAATGTTTTAAATCTTTCAAGTCTTACAAAACAATAGAATTACATATAGAAACCCATATAAGAATGACATATGTCACCGTTCAGAAAAAATCAGGGTGGAAGAAGGAATCAAATATCTATTACAAGTGTAGAATTTGTGAGGAGACCGTTGAAAAGATAGACTTCTTTCAGCATTGGGTTGGGCATTTGACGTTTAAAGAGAAAACAGAAGATCATTCGGAGAAACCTGATGTCTCAGACAGTTATCAAATCAATACAGAAATGCTGGATGAACTATTGCagcGTCTCCTATCTCCAGAGCCAATTTGCCGAAGAAGAGGCTGTCCGATCTGTCTTAGACACTTTGATAGAAAAAATTActacaaacgccatctagtggaaCATCTGCTAAACCACGCATATTCCCAATACTATTTGCATAAAGAACTCAAGTGTCAAATATGTGAAAAGGGTTTTTACAAACCGGATGCTTATAAGAAGCACATGCGGGATCATGGCGATTTGCGCGATTACAAGTGTGAGATTTGCGATAAATTTTTCAGCGATTCGAGTAATTAtagtaaacatataaaattgcaTAATAAGAATGCATATACTTGTGATATTTGTAAGAAGAAATTTCAAGCGAAGTATTCTCTTGAGAAACATATTGtgatccACGACATGCAGAAACCAATATTATGTACCCCATgcaacaagacttttttcttaGAATCAGCTTACAAAAAGCATTATAAAGTAGTACATTCGAAGGAGGGACAGACGTACTTATGTAAGATATGCAAAGTAAGATTTAAGCGTTTAAAAGATAAGTGGGACCATTTCTGGCATGTTCACAAAGAGCGGAGTATGAATGCGGATTGTCCAAAATGTTCAAAGTCTTATAGAAAGTTCCGTGATTTACAAATGCATATGAGGACTGAACATTTGACACACTTGAGGAATTCTAAGGTGAGATCAAATTAA
- Protein Sequence
- MSKVSSKRSRKSKLTCRKYEIEENMADFQKSSTNNANTKPKAKAPLASTTQTYDDFEALIDSQKKPKEVDPHKLEFSVTVAVEEFDEDSSDLIIIETNEQSTVEVISSDSETNDTVKDEHTNRLVSVEDKEYVIDLPGKLEAELVLDRNEILNATNEILKNPENIADKILGIEVRNCIGQYRTSFEDKFEAKIQSVFLKWFDWQKSIEMKFRSSPLFYKCYICKKSWWYLHDFREHLKGHAKFILDLEEYTTHEANIIAYLNVNSIVDTEFEAEGGCPKCGYEFATHISSTRKNSTYICKVTSCYRIFYTCFALKTHEYMFHTTADFTGEILDAGKRVFCKVCSFVFYSQKSYQSHVNLMHTVRSDLVVPVRLNNCPLCNGQILLGTYHICSEKKKKLQCKLCYRSFQRGRELRAHMAAQNGLFKCRICDELLSRRCVEAEHLMKHTDKFVIVKKCLICKDFTVFLDHQTAFDHISVHLNMMYEGSNYKYISKILIPKSCLLQHLEPKIEVKEELSDIVSAPELKIEQDIIDGFETDAGDENKVQIKEEIDIHEDFESDFVKEEVLLKTEADLEISRIFGVKIDASDIDIKQEMQVDEESEYEDDIIKLDFLDTMQESVEYSTQDCILKVENTTQGTQKAQEDMRDDEEDKQVDEEYDQEEDDMEEGNLNRKRNKMPKIYSCRRCGFAAAHKEYKAHIKSHCYEKLYERKIYSCTKCSTNFEKFNKFIDHFTKHNLSPLSCPECFKSFKSYKTIELHIETHIRMTYVTVQKKSGWKKESNIYYKCRICEETVEKIDFFQHWVGHLTFKEKTEDHSEKPDVSDSYQINTEMLDELLQRLLSPEPICRRRGCPICLRHFDRKNYYKRHLVEHLLNHAYSQYYLHKELKCQICEKGFYKPDAYKKHMRDHGDLRDYKCEICDKFFSDSSNYSKHIKLHNKNAYTCDICKKKFQAKYSLEKHIVIHDMQKPILCTPCNKTFFLESAYKKHYKVVHSKEGQTYLCKICKVRFKRLKDKWDHFWHVHKERSMNADCPKCSKSYRKFRDLQMHMRTEHLTHLRNSKVRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -