Apln014535.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000566.1:1724086-1728432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0034 0.21 12.2 0.3 1 23 233 256 233 256 0.94 2 15 0.00021 0.013 15.9 5.4 1 23 261 283 261 283 0.98 3 15 0.0052 0.32 11.6 0.7 1 23 313 336 313 336 0.94 4 15 0.014 0.87 10.2 0.5 2 23 397 419 396 419 0.93 5 15 0.00038 0.024 15.1 1.0 1 23 425 448 425 448 0.93 6 15 0.00025 0.015 15.7 1.8 1 21 451 471 451 472 0.94 7 15 2.1 1.3e+02 3.4 0.4 1 23 480 503 480 503 0.91 8 15 0.05 3.1 8.5 0.3 2 23 544 565 543 565 0.96 9 15 0.0006 0.037 14.5 1.2 1 23 571 593 571 593 0.97 10 15 0.008 0.5 11.0 2.0 1 23 629 651 629 651 0.96 11 15 0.0051 0.31 11.6 0.1 3 23 657 677 656 677 0.94 12 15 0.00026 0.016 15.7 1.4 2 23 696 718 695 718 0.96 13 15 0.0011 0.066 13.7 1.1 1 23 724 746 724 746 0.98 14 15 0.036 2.2 8.9 7.2 2 23 753 774 752 774 0.96 15 15 4.1e-05 0.0025 18.2 1.8 1 23 780 803 780 803 0.97
Sequence Information
- Coding Sequence
- ATGGTTACAAATCAAACTGATCCAAACAACCTGGAATGgctgaaacataaaataaagtcaatatGGGCTTCACCAAAGTTCTGCGGCCTGTGTTTGGAGAATACCGGCAACTTCTGTTCTGTAGAAATGGAGCTGGTTATAAACAAGCAGAATTTTTCCAGATGTCTTCAGGATATCATAAACTATGTTTTTAATGATGATattgaaaattttatgtcaAGCCATTATTTATGTGACACTTGCACAGAAAAAATTATTCAATGCTACCTCTTCATACACAACACAAAACAACTCTCAAGAATAATAAACAACTGCGTCACAGATTTATACTCTAAGGTCATTGATGTCAATGACCAAATAGGCAACTCCAGCAGTTTAGCTGACTACGAGAATGCAAATGTCATGATTGTTCTAGAAACTGACACAGAATTATGCAAAACTATTATGGATACAAAGATGACAGAGATCGTCCCAACTGCTACCCATATAGCCATGAAGATAGAAGAACCCAAGTGCCCTGCTATTGAAAAAGTTGAATCATCCCAAACTGAACCAATTCCAAAAGAACCTATCACAAAAATATCAACCCCCAAACCTTTAAAATCTGATGACACTCCAAATATAACCTTAAAAGAAggtcatattattataaaaccgtTAAACTCGGCAAGGAATTTAACTCCACGGTTTAATACTTATGAATGTGCCAGTTGCCCAGAAATCTTTACCACTTATAGGTCTTTGAAGGAACATGAGAAGGCTAAACACAAGAAATCTGTCTTCCATTGCAACTTGTGTAATAAATCTTATAATACACGGCAATATTTGAATATACATTACAAAACACATTCAAAAGCCAAGTGTAAGTTTTGCCAAGTAATTTTACCTGAAGGAGAACTCATGCAACACTTGAGAGCAAACCATGCATATTTGGTATTTCCTTGTAAATTCTGTGAATTGGTGTACTACAGCCAGGACTCTTTGATAACGCATTTCAATTTGAGCCAtttagtaaacaataataaaacaaaatcgcAGTGCATCATGTGCTTAAAGAATTTCAAAGAGGGTGAAATCAAGAAACATAAATGCAAGTTTGCTTGCTCCGAGTGCTTTGTGATGCCTTGCGttcattataagtatttaatgtcGTATAGAGAACAAACCCTGAATCAcgctaacaaaataaaatgcatagATTGTGATTACGTCACTAGAAGAAAGGAACATTTAATAGGTCATGTGAACAGAGAACATTTAGATCATCATCCATTCACTTGCGCTGATTGTGGTCAACAGTTCTACACCaagttaagtttaaaaactCATATAGTACAATTCCATCAAGAATTTAGTTGTGAGTACTGCGATTTTGAATTCAAAGACAAACACAGTTTGGAAAATCACAAAAAAGCATGCAAGTCTGTGATAAGAGCTTTCAGCTGCATTCATTGCGTAGCATCGTTTGATGTTGAAGAAGAATTAACTACCCACGAGAATTTGAGACATAACGAGAGTGTTTATGCTTGCAATCTTTGCAAGAGTAAGTTCCTAACCGATCTGGAACTAGAAGAACACCATGCAAGAGTCCACGGAGGTATCCAGTGCAAGAAACGAAGAAAGCGTATTGAATGTTCGTTGTGTaacttgttatttaaaaatatcaaagagTTATTACAACATGAGAAACTTCATGACCAGAATGAGGTATACCCATGCAAAGAGTGTCCAAAACAGTTTAAAAGTCTAATGAAACTGTACATTCATAGTCAAAGGCATTACACAAATAGAATTAAATGTCTCCGTTGTAATAAGAAAGTGGCTGCCTCGTTCTACTCACAACATGCTGTCCGCTGTCCGTATAAAAGAGAGGGTGCATTAAAACATGTTTGTGAAGTTTGTGGAAAGGCATTCCATCTGGAATCTCTCTTACGGTTCCACCAAAAGATTCATCTAGACCCGGAGCCCTGTCCTCAATGTGACAAAATCATCAAGCCTTCAAGTTTAAAAAGACATATGGAGCAGGTTCATGGTGATTCATCAGATAAACAGAAAGGCAAAATAGTAGCAAAGCTGCCTATGATTGAATGTCAGATATGTGGCCATATTGTTAGAAAAAAGCATGATTTAGAAGCACATATGAAcagatatcatttaaaaattaaaccctATGTTTGTCAGATATGTAACAAAGATTTTTGTGGGAAAATTCGCTTAAAAGAACATGTAGCAACTCACACCAATGATAATAATTGCTTCTGCTccatttgttttaagaaatttgCAAATCGAGTGTGTCTAAAAATGCATTTCAGGATGCATACGGGAGAGCTGCCATATTCTTGTGACATCTGCGGACTGAAATTCAGGTCTTCCAGTATGATGAAGACACACCGGTTAAAGAAACATTTAGATAAAACCATATGCTGTCCGTTATGTGAGAGTATGTTTTACATGGTACGGGATATGAGGCATCACTTCAAAAAAGTCCATTGGAAGTTTAAGGATAGACCGTTCAATGTCAGAGACGTTGAGGAACTCGGAGAACAGTATTATCATTTGTTTGAAGACGGGAGGGTACCAAAACTAGACTCctga
- Protein Sequence
- MVTNQTDPNNLEWLKHKIKSIWASPKFCGLCLENTGNFCSVEMELVINKQNFSRCLQDIINYVFNDDIENFMSSHYLCDTCTEKIIQCYLFIHNTKQLSRIINNCVTDLYSKVIDVNDQIGNSSSLADYENANVMIVLETDTELCKTIMDTKMTEIVPTATHIAMKIEEPKCPAIEKVESSQTEPIPKEPITKISTPKPLKSDDTPNITLKEGHIIIKPLNSARNLTPRFNTYECASCPEIFTTYRSLKEHEKAKHKKSVFHCNLCNKSYNTRQYLNIHYKTHSKAKCKFCQVILPEGELMQHLRANHAYLVFPCKFCELVYYSQDSLITHFNLSHLVNNNKTKSQCIMCLKNFKEGEIKKHKCKFACSECFVMPCVHYKYLMSYREQTLNHANKIKCIDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQEFSCEYCDFEFKDKHSLENHKKACKSVIRAFSCIHCVASFDVEEELTTHENLRHNESVYACNLCKSKFLTDLELEEHHARVHGGIQCKKRRKRIECSLCNLLFKNIKELLQHEKLHDQNEVYPCKECPKQFKSLMKLYIHSQRHYTNRIKCLRCNKKVAASFYSQHAVRCPYKREGALKHVCEVCGKAFHLESLLRFHQKIHLDPEPCPQCDKIIKPSSLKRHMEQVHGDSSDKQKGKIVAKLPMIECQICGHIVRKKHDLEAHMNRYHLKIKPYVCQICNKDFCGKIRLKEHVATHTNDNNCFCSICFKKFANRVCLKMHFRMHTGELPYSCDICGLKFRSSSMMKTHRLKKHLDKTICCPLCESMFYMVRDMRHHFKKVHWKFKDRPFNVRDVEELGEQYYHLFEDGRVPKLDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909108;
- 90% Identity
- iTF_01502353;
- 80% Identity
- -