Apln018257.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1213454-1223476[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.1 6.3 7.5 0.8 3 23 97 118 95 118 0.91 2 26 0.0008 0.049 14.1 0.2 2 23 189 210 188 210 0.97 3 26 5.6 3.5e+02 2.0 0.1 1 10 214 223 214 226 0.90 4 26 0.0014 0.084 13.4 3.1 1 23 241 264 241 264 0.97 5 26 0.3 18 6.0 1.4 2 23 272 294 271 294 0.95 6 26 0.00016 0.0099 16.3 2.3 2 23 302 324 301 324 0.96 7 26 6.8 4.2e+02 1.8 0.8 1 10 330 339 330 341 0.92 8 26 0.29 18 6.1 0.2 5 23 435 454 433 454 0.90 9 26 0.00022 0.013 15.9 0.7 2 23 478 500 477 500 0.94 10 26 0.22 13 6.5 1.0 2 23 522 543 521 543 0.96 11 26 0.026 1.6 9.4 0.1 1 20 547 566 547 568 0.93 12 26 0.22 13 6.5 4.7 1 23 574 597 574 597 0.92 13 26 0.71 44 4.9 2.2 2 23 605 627 605 627 0.88 14 26 0.00015 0.0095 16.4 1.3 2 23 635 657 634 657 0.96 15 26 0.0024 0.15 12.6 5.2 1 23 663 685 663 685 0.98 16 26 0.0058 0.36 11.4 5.6 1 23 691 713 691 713 0.98 17 26 1.3 82 4.0 0.3 1 13 719 731 719 733 0.88 18 26 0.74 45 4.8 3.4 1 23 826 849 826 849 0.91 19 26 0.38 23 5.7 0.1 2 23 875 897 874 897 0.92 20 26 0.0025 0.15 12.6 2.8 1 23 1016 1039 1016 1039 0.92 21 26 0.033 2 9.1 0.4 2 23 1066 1088 1065 1088 0.94 22 26 0.79 49 4.7 0.4 2 23 1111 1132 1110 1132 0.96 23 26 0.00062 0.038 14.5 0.7 1 23 1136 1158 1136 1158 0.96 24 26 0.00031 0.019 15.4 0.3 1 23 1163 1186 1163 1186 0.97 25 26 2 1.2e+02 3.5 0.6 2 23 1194 1216 1194 1216 0.88 26 26 0.27 17 6.2 6.1 1 23 1222 1244 1222 1244 0.97
Sequence Information
- Coding Sequence
- ATGGAGCATCTAAGAGATCAACACGAGAAGCAGTTATTTAAGGATACACCTAATCATATTTTACCGTTCAAATTTGAAGGTCCCGGACGGGGAACTAGAATGATCAGAATAGAAAGACCTTCAAAACTGAGTGTAGAACTGAAGTTTCTATCAAAACGATCCACTGCCGACGATAGTACCGTAAAGGGTTACGTGTCAGAGACAGCGAAGAACAAGCTGAATTTAACGCATATTTTGCTCAATTCTAACGCCACCCCAATACGGTGTAAAGATAGTTTAGGATACGGGTGCACATTTTGTCTAAAAAAGTTCCCAGAACCCACCAAACTGAAGAAACATTTCCTCGAAGAACATAACAacgacaaattaataaaatgtatgtctgCGAAAATGCTAGAGCATGTCATCAAGCTTGATATAACTTACTTAAATTGCGCTCTTTGCGATAAAGACATTGCGAAACTCGAcgattttatgtttcatttgaaacatgaacataaaaaaaatatgtacttggATGCCAAAACTCATATCGTTCCGTTCAGATTCGATACACCAGAATTGAAATGTGCTATATGTCCCACTGAATTTGGTACTTTTAAACTGTTACAAGAACATATGAACTCCCACTTTGGGAATTACATATGTGAAATATGCGGCGCTGGTTTCGTAATAGACAGGCTTAGGATTTGCCACGTCAAGCGACATGGTAGCGGCGAATTTAAGTGCGATCAGTgtgataaaacatttaataaccaAATCAAAAGACGAGAgcacaaaaaaagaatacatatGGGTTTCAGTGCGAGGaacaaatgtaaattttgcTCAGAAAGATTCGATGATTACTGGAAAAAAGTAAGACATATGGTCAAAGAACATGGGGTACCACCAGTTGTTCTAAAGTGTACAGCCTGCGACCGTACTTTTAACAACCAGAGATCGTTGTCACGCCATACGAAGAAAGATCACCTTTTGGAGCGAAGACACAAATGTGGCGAATGTGACATGAGATTCTTTGAAGATTTGCCTGCATACATTGTGGTCAAGCCTTTGTACAAAAATGCAGTTGGCGAAGCCATATGCGTTCGAAACATGGAGAGGAAGTGTAgtGTACCACGGCACACCGAAGTAACAGATGAAGATATTATCACAACGAAGGAAGCGTCTGTACTGAAAACAGTTACATATCATGAGCCTGAAAAAAAGTCGAAAAATACAACTGAAaccttgaaaattattttaaaatattctaatgcAAATTTAATACGGAAACAAGACAGCGATGGATACGGCTGCATTTTCTGTCCTAAAAAATTTGCAGAGCCCTATAAACTAAAAGAACATTCTATTAAAGAGCATTCTAATGTTGAGAGTCTTCGAATGCCGAGACCTTTCGAGTGCGTAATCAAAGTGGATATCACAGACTTAGAGTGTAAACTTTGCAAAAAGAAGTTCACTAAACTGGATGATTTGGTTACGCATCTAAAGGAGGTGCATGATAAGAACATTATGACTGATAACACAGATATAATACCATTTAAATTCGACGGAGAAGAGTTACGATGTGCAATATGCGACGCAAGATATTCTACATTTAAGATACTGCAGGAACACATGCATAATCATTTCAGGAATTACATTTGTGAGATTTGCTCCTCTGGTTTTATAACTAAGCGTCTGCTAGTTCGCCACAAAAGTAGATATGAGCAAGGAGAGTTCAAATGCGGGCATTGCGAGAAGACATTTGTTCACGATCAGAAAAGGCGGGACCACGAGCAAAGGATACATCTTGGTTTGAAAAAGAGGAACAGATGCAAATTGTGTAACGAGAAATTTGATGACTACTGGACAAAAATGCACCACATGGTCGACAAACATAATGCTCCACCAATATCCTTAAAATGCAATGCATGCGAGCGCACGTTTACTAACAGAAGGTCCTTAGCAAGACACGTAAAAAAGGATCATTTAATGGAAAGAGATCACGTGTGTAGTATTTGTCACATGCAGTTCTTTTTAAAGCATTATTTGGAAGCACATATGAGGGTGCATACTGGAGTGAAAAATTTCAGATGTCATGTGTGTATGAAGCACTATGCATCTAAAAAGTCGCTTCGTCAGCATCTGCGGGCTCATGCCAATGATCGGAAATTTGCTTGCAATTTTTGTGGATTGGCGTTCGTGCAGCgaaAAAAAGatCAGCGGTCAAGAAGCAAAGAACAACATGAACCAATCTATTATGAAGACGAAGAAGAGGAAGAGAAGAAACTGACTCTAAACAAGAAGATGAACTTTTCGTCTTTCATATCAATTCGCCCGGTGGGCAAGATGGCAATACCTTGGGTAAGAGATCAACAGAAGAGAATTGCCCAACAGAAACGCATGTCGGAATTAGATTGGCAATTCGACAACATCCGATCAATTTTGAAATGCTCAAATGCGACTCCGGTACGCTGTCGAGTTGGCACTAGATTTGCTTGCAGTTATTGCCTGAATCAGTTCCAGAACCCACATGAGCTAAGGGTACACACAGATCAATGTCATCAAAATGATAAGGCAGAGTTCTTTAACGCGCGGTCATTATCCAGGCATATAGTTTATCTTGATATTTCACagctaaaatgtaaaatttgcgATAAAGCTATGGAAGGATTGGAAGAAATCATGGATCACTTGAAGACTGAACACAATGAATTAATACATAAGCAGATCAAAAATCAAATCCTTCCTTTCAAATATGAGGACAGTAAAATTGTGTGTGGTGTTTGCTCTCTTGATATTGGAGAGTATTTAGATATTCAGGATCATATGAGTGAACATTATAGAAACTACGTTTGTACTGAACCAGCATCCGTACTGATCGAGATAGAAGTTGATACGTCATATATGATCGGCAGTACGATTGATTATGTTGATGAAACTCCAGCAGGCGATAACGAGGCACAAGTTGTTAAAAACGAAGTCGAAAAGCATAGAGAGAATATTAGAACCATACTACTTTCCACTAACGCGACTCCAATCGGACGATACGGCAGTCTCGGCTACACTTGCTGTTACTGTACAGAGCAGTACACTGATCCCAAGGAACTGAAAAAGCATACAATAGACAGCCACGATGAAGTAAATATTTCTCAATTCATGAACAATCATACgatgttaaattatattgtcaAATTAGACATTACGGCATTAAGATGTGAAATGTGTGTGAAGCCCTTTAGTGAATTGTCACATATCATTGACCATCTGACGATAAAGCACAAGAAATACTTTCACACAGACATTAGCAGTCACATCGTACCATTTAGGTTTGATTCGGAAACGCTTTATTGTGTCGAATGCTCCACCGAATACAGGAACTTTAAAATTCTATTAGAACACATGAATTCACACTATAGCAATCATATCTGCGAAGTTTGTAAAGCGGGCTTCGTTACTAGAAGAATGCTTCAAGCTCACATGTACAGACACAAAATTGGTGTTTTCCAATGTGGATATTGTCCAAAAATTTTCGACACACGAATCAAAATGAAAGTGCATGAAAGAGTAGTGCATATGTACGTGAAAAAGAGGCCCAAATGTGGAGCTTGCGAAAAGAAATTTGTTGATTTCAACGACATGGTACAACATGAAGAGCACGTGCATGGATTGAAAAGGGAATTCAAATGTGAAATGTGTAACAGAATGTTCAATTGTCAGAAGTCGTTCACTATACATAATAGATATCATTGTGTTTCTGATGTTGCTTAA
- Protein Sequence
- MEHLRDQHEKQLFKDTPNHILPFKFEGPGRGTRMIRIERPSKLSVELKFLSKRSTADDSTVKGYVSETAKNKLNLTHILLNSNATPIRCKDSLGYGCTFCLKKFPEPTKLKKHFLEEHNNDKLIKCMSAKMLEHVIKLDITYLNCALCDKDIAKLDDFMFHLKHEHKKNMYLDAKTHIVPFRFDTPELKCAICPTEFGTFKLLQEHMNSHFGNYICEICGAGFVIDRLRICHVKRHGSGEFKCDQCDKTFNNQIKRREHKKRIHMGFSARNKCKFCSERFDDYWKKVRHMVKEHGVPPVVLKCTACDRTFNNQRSLSRHTKKDHLLERRHKCGECDMRFFEDLPAYIVVKPLYKNAVGEAICVRNMERKCSVPRHTEVTDEDIITTKEASVLKTVTYHEPEKKSKNTTETLKIILKYSNANLIRKQDSDGYGCIFCPKKFAEPYKLKEHSIKEHSNVESLRMPRPFECVIKVDITDLECKLCKKKFTKLDDLVTHLKEVHDKNIMTDNTDIIPFKFDGEELRCAICDARYSTFKILQEHMHNHFRNYICEICSSGFITKRLLVRHKSRYEQGEFKCGHCEKTFVHDQKRRDHEQRIHLGLKKRNRCKLCNEKFDDYWTKMHHMVDKHNAPPISLKCNACERTFTNRRSLARHVKKDHLMERDHVCSICHMQFFLKHYLEAHMRVHTGVKNFRCHVCMKHYASKKSLRQHLRAHANDRKFACNFCGLAFVQRKKDQRSRSKEQHEPIYYEDEEEEEKKLTLNKKMNFSSFISIRPVGKMAIPWVRDQQKRIAQQKRMSELDWQFDNIRSILKCSNATPVRCRVGTRFACSYCLNQFQNPHELRVHTDQCHQNDKAEFFNARSLSRHIVYLDISQLKCKICDKAMEGLEEIMDHLKTEHNELIHKQIKNQILPFKYEDSKIVCGVCSLDIGEYLDIQDHMSEHYRNYVCTEPASVLIEIEVDTSYMIGSTIDYVDETPAGDNEAQVVKNEVEKHRENIRTILLSTNATPIGRYGSLGYTCCYCTEQYTDPKELKKHTIDSHDEVNISQFMNNHTMLNYIVKLDITALRCEMCVKPFSELSHIIDHLTIKHKKYFHTDISSHIVPFRFDSETLYCVECSTEYRNFKILLEHMNSHYSNHICEVCKAGFVTRRMLQAHMYRHKIGVFQCGYCPKIFDTRIKMKVHERVVHMYVKKRPKCGACEKKFVDFNDMVQHEEHVHGLKREFKCEMCNRMFNCQKSFTIHNRYHCVSDVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -