Apln012710.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000540.1:18024545-18044216[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00054 0.033 14.7 1.0 1 22 292 313 292 316 0.92 2 12 0.0017 0.1 13.1 1.6 2 23 437 459 436 459 0.93 3 12 0.0047 0.29 11.7 0.0 1 23 465 487 465 487 0.95 4 12 0.038 2.4 8.9 0.1 1 23 1263 1286 1263 1286 0.89 5 12 2.3e-06 0.00014 22.1 2.4 1 23 1291 1313 1291 1313 0.98 6 12 4.1e-05 0.0025 18.2 1.8 1 23 1319 1341 1319 1341 0.98 7 12 0.00019 0.011 16.1 4.9 1 23 1347 1369 1347 1369 0.98 8 12 3.1e-07 1.9e-05 24.9 0.7 1 23 1375 1397 1375 1397 0.98 9 12 0.0043 0.26 11.8 4.0 1 23 1403 1425 1403 1425 0.98 10 12 0.00014 0.0086 16.5 0.2 1 22 1431 1452 1431 1452 0.95 11 12 0.036 2.2 8.9 3.8 1 23 1480 1502 1480 1502 0.96 12 12 9.8e-06 0.00061 20.1 3.6 1 23 1508 1531 1508 1531 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTATTTCTTTACAATTCTACTGTTTGTAGATTATGTGGGGAAGAAAATGATAATGGAACACTATTGTTTTCTTGTGAAGAAAATAATCCAAACTTAAGTGaagttattaatacatatttgcCAATCAAGgtaTTCGATGATGGACAATTGCCTCGAACAATCTGTCCAGGATGCACTATTCAGTTGGAGGCCACCGTAGAATTTTTAACACTAATTATTAACGGACAGAAAGTAATTCGTGAGCTACATCTCAGAGAGagagaatataaaaaaacaatcctAAATCCTTCTCCTGAACAAGATGTCATTAcagaaaaaattgtttatgaagTAAACACAAGTAATGGAGTATACCAAGTGGAACACCCTATTGCTTTACAAGTGGCTGGTCTTGACAAACCAAAACGTAAACGAGGCAGGCCACCTAAAAAGATCAAAAGTCCTGAAGAGTTGGCTCAAGAAGCAGCTGCAAAAGAAAAAGAGTTAAACTCTGTAAAAGTATGTGATAAGGATGAAGAGCCTACTGGAAAACGGAGACGGAAAACACCAACTAGATTTAGAGAAGCTGTGCAGGGTAAAGAActtgaaagaatatttaaagaagaAGGAGTGACTGATGGTGAGGAAAGTGACCGTGATCTGAAACCTAATATGGACATCGAAGTAAAGGTTCCTGTGTCAAAAGAGCCAGAAATTATAGGACATATGGAGAACTCGGGAGAAGTGGTGGTCTTTGTCAAAGGCAAGGGGAGGGGTAGACCAAAAGGCCCAATGCGCTTAACTCGCAAAGAATGTGCAATCTGTGGTATGGAGTTCTCCTGTGCTGGACGTTACATGTCCCATGTTGCCCATCATGGACCGGTCATATATCAATGTGGTCAGTGTAATGAGACCTTTGATACCCGGCTTAACTTCACCAACCATCAAAAAGAGCTGGAACATGTTGGACAAAATGTTATCCCAATTGGCAAGAAGAATGCTAAAAATATACAGAACATATCAGAAATGATTAAAATGGAATCACAAGCTGCAAGTATTCAACCCATAACAGAGACTCCTGATGTGGCAGTAAATATGTTAGTAGACAATGTGATGACAGCTCTACCTGACCTGAGTGCAGAGCCAGTTATCAATGAGGCTGAACAATTGCGTTCTGACAACCTCACCACTGAAATAACTTCTAGTCCAAGTGTGGAAGGTGCTGTTAAAATCATGGATACATCCCCTGATGTAGTAGAGGTTACAGAAAAGTCTGATGAGGTGGAACAAGTGCAGACCTTACCTGCAGGGAAAGTGAGACTGAACTGCCCCCACTGtgaaaaaacatttagtaataAACAGAGCAAGTCACTGCATATTAAGGCGGCGCACGTGGGCGAGCGGCCGTACGTGTGCGGCGAGTGCGGCGCGCGCTTCGCCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACTGTAGCGTCTTAGCCGACTTCCTCAGCGAGACGACCATTATACACACCTACCCGCGCTCGCTGGCGCTGCACGCCGTGTCGCACCGCCGCCAGCGCCCGCGACACGCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTTCTGAATCATCCGTCCTCGGTTGTGTACCACAAGGAAGCCGAACACGCAGGCCAACGATACGTGTGCAACAAATGCGGCAAGTCCTTTAAACACATACAGTTATTGCAAAGACATCAACTCGTTCACTCTCAAGTCAGACCTTACACATGCAAGACTTGTGAAGCTTCATTCAAAACTAAGAGAAACCTACTTAATCATCAGCTCTTACATACGGGTGTCAAAAAATTCTCCTGTGAGATATGTAAACATAAGTTTGCACACAAGACCAGTCTCACGTTGCACATGAGATGGCATACCGGTCAGAAACCTTACTCGTGCAACACGTGCGGTAAGAGTTTCAGTCAGAAGGGGAATCTATCGGAGCACGAGCGGATCCACACGGGCGAGAAGCCGTTCCAGTGCTCGCTGTGCCCGCGGCGCTTCACGACGTCGAGCCAGCACCGCCTGCACGCGCGCCGCCACGCCGCCGACCGGCCCTACGCCTGCACGCACTGCGGGAAGAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGTGCGGCGCGAGGCGGGGGGCGGTGCGCCGGGCGGGCCGGGGGGCGGTGCGGGTGGGCCGGGGGGCGGAGCGGGCGGGGCGGGGGGCGCTCACCGCTGCTCGTGCTGCGCGCGCACGTTTGCGGAGCGCTGGGCGCTGCTGAAGCACATGCGCACGCACTCGGGCGAGCGCCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTTCATAAACAGATCAGTTTACTCGCCAACTCGCAGCCTCAACCCCAGCAGATCCAACAAACGGTGTCCGTCCCAAATAGTTCACCGATTGGCATGAAATTCGAGACCCAAGAAGACTCCCTCGAAGAGAGAGTCATTTATGTGACCTATGACGTTGACGAAGCTGACTCGCCAGCATTCCATATACTGTCCCCAGAACAGGCGGCCGGTCTTGATGAAAATAAAGTGATGACAACATGCGAGTTATATTCGGGCCCATCACTGCTTGTCCCACAACCAAAACTGGAACAATTGGAGTTGGCGTCGGAACCATTGGAACAAGAAGACCTAGAGCAGCTACAGGAACAACTTGTGTTAGAAGGACATGAACATATGCCTGTGACAGATGAACAAGGCAATCCACTCCATTTCACGATGCAAGATGGCACAAGACTTGCTATCACATCTGCTGATGGGAAATCTTTACAGGTGATTACACAAGATGGCCAGACAATTCCTGTTGAAATAAATGGATATGCTGATGAAgagGAAGTGGACAACCCGGACACGATAGTGCATCAATTGAATCTACAAAAGAGCGTGGACAACAACGTGTCAGCGCCCGTCACTCACTACTTCACTATcgtttaa
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLFSCEENNPNLSEVINTYLPIKVFDDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREREYKKTILNPSPEQDVITEKIVYEVNTSNGVYQVEHPIALQVAGLDKPKRKRGRPPKKIKSPEELAQEAAAKEKELNSVKVCDKDEEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGEESDRDLKPNMDIEVKVPVSKEPEIIGHMENSGEVVVFVKGKGRGRPKGPMRLTRKECAICGMEFSCAGRYMSHVAHHGPVIYQCGQCNETFDTRLNFTNHQKELEHVGQNVIPIGKKNAKNIQNISEMIKMESQAASIQPITETPDVAVNMLVDNVMTALPDLSAEPVINEAEQLRSDNLTTEITSSPSVEGAVKIMDTSPDVVEVTEKSDEVEQVQTLPAGKVRLNCPHCEKTFSNKQSKSLHIKAAHVGERPYVCGECGARFAYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKRDDHYTHLPALAGAARRVAPPPAPATRQGLRLRPVREGNCSVLADFLSETTIIHTYPRSLALHAVSHRRQRPRHAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHIQLLQRHQLVHSQVRPYTCKTCEASFKTKRNLLNHQLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNTCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRRFTTSSQHRLHARRHAADRPYACTHCGKRFVSRGSWAAHVRREAGGGAPGGPGGGAGGPGGGAGGAGGAHRCSCCARTFAERWALLKHMRTHSGERPFRCPHCPRAFADCSNLNKHKKQVHKQISLLANSQPQPQQIQQTVSVPNSSPIGMKFETQEDSLEERVIYVTYDVDEADSPAFHILSPEQAAGLDENKVMTTCELYSGPSLLVPQPKLEQLELASEPLEQEDLEQLQEQLVLEGHEHMPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSVDNNVSAPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -