Apln008085.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000503.1:11607418-11616203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0041 0.25 11.9 0.7 2 23 212 234 211 234 0.95 2 12 1.2 76 4.1 0.3 6 23 244 261 242 261 0.92 3 12 0.0025 0.15 12.6 3.9 1 19 294 312 294 317 0.93 4 12 4.5 2.8e+02 2.3 0.4 6 23 327 344 325 344 0.94 5 12 0.0011 0.071 13.6 0.3 3 23 352 372 350 372 0.96 6 12 0.00011 0.0069 16.8 2.4 1 23 380 402 380 402 0.97 7 12 0.0058 0.36 11.4 1.5 1 23 411 434 411 434 0.97 8 12 0.00021 0.013 16.0 0.2 1 23 440 462 440 462 0.97 9 12 1.7e-06 0.0001 22.6 4.1 1 23 468 490 468 490 0.98 10 12 0.00036 0.022 15.2 1.0 1 23 495 517 495 517 0.98 11 12 2.8e-06 0.00017 21.9 4.2 1 23 523 545 523 545 0.97 12 12 0.00013 0.0078 16.7 2.9 2 23 552 574 551 574 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGGACATGAAAGAACTTTGTCGTTTATGCGCTAAGAAAAACGATTTTTCGAAGGATTTATTGGATGAAAGTAAccgaaatgtattaaaattaatacaagaTTTTATACAAATCATCGTCTATGATAACGACACTTTACCCACTCGAATTTGTTTAGATTGTGAGGAAAAAATGgtttcatttcaattatttgtaCTTGAGTGCTATAAGGTTCAagaaactcttaaaaaaatgtatgaagatAGTTTTGATTCTCTCGgcataaaacttgaaaaaatgcCAATTGATTATGGAGTTCCTATTAAATCTGAGGTTAAAGATGAGGTCACTGCAGAAGATATtgttaGTGCACTGAATAATGATGCTTCACTGTCAGTGATAGATGCCTATCCAGACAGTAGTGAGAACAACGACCTGGACATTCAAAATGATGATGTTGATCTTGAGCCTAATGAAGATGAGGAAGATGATACTGATGATGAATATCTTGACAAAATAGCGATTGCAGCCTTGAAGCcagtaaaaagaaaacgaattAAAAGAAAGGAAATAACAGAAGAAGAAGCAGAGGAATTCAACCAGGTTTTaaagaaatcaaatttaaaagttaaagattttgTGAAATTACAGTGCACTTTTTgtgaagaaaaactaaaaacttggAGTGGTTTACATGCGCATTATGCAAGAGAGCATAAAAGTGAACcttatgtattttgtttgtgtgGTTTTGTAGTACGATCAAAAAGTGTTCTTTACAAGCATGTATCAGATCACAAGCTTGaaagtagaaaattaaagaTGAATTCTGAAACGGATGATGAAAAGCAAGACGTCAAATATTCAAGTTTAAACGTAAAAGATTTCATAAGATTCGTCTGTCCCAAATGTGAAAAAGAGTGTTCAAGTTGGTACAGTTTAAAATCTCACTGTGACTCAGCTCACAAGATATTGCCAGTAGTATCTTGTAGTTGTGGCATCACACTTAAGTCAAAGTCAGTCATGTATAAACATGTACAGGACCATAGGAATCCGAATGTGTTGgcGTGCGACAAGTGTCCACGCATCACGAAAACTTTAGCagctttaaataaacataagatGAGACATATACCAAAATCTGAAAGGAAATTCTGTTGTGGCTCATGTGAGAAAATTTTTACTTCTAAAGACGCATTAAAATCTCACGAAAGATCACATATACCAATAGAGGAACGTAAAATTTATCACTGTGAGGCGTGTAATATGAAATTTACAACACGTTCATCGGCAGCATCTCATAAGCGGGTGGTACACGACAAGATAAAGGGATACGTATGTGATCTCTGTGGGTACGCTTGTGGCACTAACGGCGAGCTACGACAGCACCGCGCCATACACAGCGACGAGAAACCTTTCGTGTGCAGAAAATGTTCTAAACGTTTCAAAACATATTCGAATCTCAAGACTCATATGGACACTCACGAAGAGACATCATACGAGTGCTACATCTGCAGACGTGTGTTGAACAGTCGTCGTACGCTCCGCAAACATCTCCTCGTACACGAAGATAAGTGCAGGCATGTTTGCTCTTACTGCAATAAGGCTTTCAAGAGGAGACAAACGTTAAAGGTGCACATGTACACACACACTGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGTTTCTCGTACGCGTCGACGCTACGCTCGCACCGCTTGCGCTGCCACCCGGACAAGATGGCGCAGGCGCATGATACCTATACTACTTACAACCATGTCGCAATGTCGCAGGAGGATTATATTAAGAACGATCTTTCATCTATAAGTGTACCTGTAGCAAAGAACGAAGTTGAGGCTATATAA
- Protein Sequence
- MAMDMKELCRLCAKKNDFSKDLLDESNRNVLKLIQDFIQIIVYDNDTLPTRICLDCEEKMVSFQLFVLECYKVQETLKKMYEDSFDSLGIKLEKMPIDYGVPIKSEVKDEVTAEDIVSALNNDASLSVIDAYPDSSENNDLDIQNDDVDLEPNEDEEDDTDDEYLDKIAIAALKPVKRKRIKRKEITEEEAEEFNQVLKKSNLKVKDFVKLQCTFCEEKLKTWSGLHAHYAREHKSEPYVFCLCGFVVRSKSVLYKHVSDHKLESRKLKMNSETDDEKQDVKYSSLNVKDFIRFVCPKCEKECSSWYSLKSHCDSAHKILPVVSCSCGITLKSKSVMYKHVQDHRNPNVLACDKCPRITKTLAALNKHKMRHIPKSERKFCCGSCEKIFTSKDALKSHERSHIPIEERKIYHCEACNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDEKPFVCRKCSKRFKTYSNLKTHMDTHEETSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAQAHDTYTTYNHVAMSQEDYIKNDLSSISVPVAKNEVEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707233;
- 90% Identity
- iTF_00707233;
- 80% Identity
- -