Apln003469.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- ZIPIC
- Assembly
- None
- Location
- CADEBC010000301.1:4600059-4601387[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2e-05 0.00076 19.8 1.2 2 23 131 152 130 152 0.97 2 11 9.6e-08 5.9e-06 26.5 1.3 1 23 158 181 158 181 0.97 3 11 1.7e-06 0.0001 22.5 0.5 1 23 189 211 189 211 0.98 4 11 0.00056 0.035 14.6 0.6 1 23 217 239 217 239 0.98 5 11 0.0025 0.15 12.6 5.6 3 23 247 267 245 267 0.95 6 11 1.1e-05 0.00066 20.0 3.6 1 23 273 295 273 295 0.97 7 11 8.8e-07 5.4e-05 23.4 1.9 1 23 301 324 301 324 0.97 8 11 0.18 11 6.7 0.3 5 20 330 345 328 348 0.90 9 11 0.033 2 9.0 0.7 2 23 355 377 354 377 0.94 10 11 0.32 20 5.9 0.1 1 23 383 408 383 408 0.87 11 11 0.00024 0.015 15.8 0.6 1 23 414 437 414 437 0.91
Sequence Information
- Coding Sequence
- ATGTATTGCTGTTCAAACATTAATATTGAAGACGGGGACGGTTTACCTTCCTATGTGTGTAAAAGATGTGAAAATAAACTGAATGCTTGCTACCACTTTGTATTAAAATGTGAAGAATCCGATAAGCAACTTCGCTCGCAGTCATTTCTTAGAATTTCGCAGGTCATAGAAAAAATTGACGACTATGTATCGGATGTAAAAACAGAACTGAAAAGCCTAAGTGACGATGACAATACCTATGAGAACCTCCTCAGTGATGATGTACCTCTCGAAGAACTACGTCAAGACGCAGCTGCTGTGAAGTTCAAACACTCTAAAGTAGAACACAAATTAGTAGAAAAACGTAAATCTTATAAAAGGAGAACCAAATGTCGAAGTAGAGGAGTGGTAAAATGTGCCGTGTGTGGCAGACAGTGCACCAACCAGTCGGCTTTAGATACACACATGAGGTCTCACACCAACGTATATTCCTACCCATGTTCCTTAtgtgataaaaaatacaaagacaGCGGTAACTTAAAGCGTCACATGAATAGAAATCATTCAGAACATAGGCAACGTAATTTCATATGTGAGAGTTGTGGTAAAGGTTTCTTCAGTAAAAGCGATGTTAATGTTCACATGCGGACTCACACTGGCGAAACACCCTATGCATGTACAGAGTGCTCTGCTAGATTTACACAATTAGGAGCAATGCTAAGACATAAAAAACGACATTCAGGTGAGAAGGACCATTTGTGTTCAACTTGTTCCAAAAGATTCTGTACTAAACAAGAACTTAAGATGCATTATGCGGTGCACTCGACTGAGAAAAAATTCATTTGCTTGTTTTGCAATACATCATTCAAGTATCAATCTAATTTAACGAAACACAAAAGACTGCACTCGGAATCCCACAGCTTTATTTGTAACTACTGTGGACGCAATTTCAAGTTTAAAGGTAACTTGaagttacatataaataagCAACACTCGGAGAAATCAGGATACTGTGAATTGTGTTCAAGGCATGCGGCTAACCTCGAAGCTCATATGTGGAGACATACTGGTGAGCGACCGTTAAAATGTGAGCTATGTACGAGTAGCTTCTTTGAACTAAAGGCACTCGCTCGCCATATCAATTTTAAACACACAAAGACAGATAAGTACAAATGTAAAGTTGAAGGCTGCTCAATGGTATTTCCTTCCCGACCCATGCTTGACTTCCACATAGCTAAACTGCACGGTACACATATCCCGTTTCCATGTGACCGTTGTACAAGAGCATTTTATAGGAAGAATGATCTTGCTAGACATAAAATTGGCACTCATAAGGAGAGACTTgcataa
- Protein Sequence
- MYCCSNINIEDGDGLPSYVCKRCENKLNACYHFVLKCEESDKQLRSQSFLRISQVIEKIDDYVSDVKTELKSLSDDDNTYENLLSDDVPLEELRQDAAAVKFKHSKVEHKLVEKRKSYKRRTKCRSRGVVKCAVCGRQCTNQSALDTHMRSHTNVYSYPCSLCDKKYKDSGNLKRHMNRNHSEHRQRNFICESCGKGFFSKSDVNVHMRTHTGETPYACTECSARFTQLGAMLRHKKRHSGEKDHLCSTCSKRFCTKQELKMHYAVHSTEKKFICLFCNTSFKYQSNLTKHKRLHSESHSFICNYCGRNFKFKGNLKLHINKQHSEKSGYCELCSRHAANLEAHMWRHTGERPLKCELCTSSFFELKALARHINFKHTKTDKYKCKVEGCSMVFPSRPMLDFHIAKLHGTHIPFPCDRCTRAFYRKNDLARHKIGTHKERLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441796;
- 90% Identity
- iTF_00823305;
- 80% Identity
- -