Apln017582.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctia plantaginis
Gene Symbol
-
Assembly
None
Location
CADEBC010000858.1:3866757-3885403[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00046 0.028 14.9 3.1 1 23 241 263 241 263 0.97
2 11 0.00028 0.017 15.6 6.5 1 23 269 291 269 291 0.96
3 11 0.0019 0.12 13.0 6.9 1 23 297 319 297 319 0.98
4 11 0.0008 0.049 14.1 3.3 1 23 325 347 325 347 0.97
5 11 7.9e-06 0.00049 20.4 0.9 1 23 353 375 353 375 0.97
6 11 4.5e-06 0.00028 21.2 0.2 1 23 381 403 381 403 0.98
7 11 5.7e-05 0.0035 17.7 0.4 1 23 408 430 408 430 0.96
8 11 0.25 15 6.3 0.7 3 23 438 460 437 460 0.90
9 11 1.8e-05 0.0011 19.3 0.8 1 23 547 569 547 569 0.98
10 11 0.00011 0.0069 16.8 1.4 1 23 634 656 634 656 0.96
11 11 3.2e-05 0.002 18.5 4.3 1 23 666 688 666 688 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACGCCTAATAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTTACGAGTTCCGCGGACCTTACTAAAGGCGAGGTGGAGACCCCAAGCAGTTTGAGTTATACTTTGGGAAATACGGTATCCCCGGAGACAACTCTGACTGTTATGTCTACAAATAAGCCCCAGGTCCAAGAGAAAGTAGGTGCAGTTACAGTGGCCGTCTCAAATTCTGGTGCACAACTAACAAGAGTTGTAACATCAGGTACTCCATTAACAGGCAGGCGGGCTATGTTTGTAGTCAATGATGCACCTGCACATACATTAAACAGGGTATCTCAGCAAAATCAGACAGCCACCATACAAAcAACCAATTTAGCATCTAAACCGTTCATGACTCCACTCGGACCTATCCAGTTAACTGCCGAAGAATGTAACGAAATACTAATGAAAAGAGCCCTTCAAGCTCAAGGAATACCAACTCCTGTCATAGACGCATCGCAACTTAACCACACGTTATTGAATGGAAGTTTAAAGAGTTTGGCCGAGGCAACATCGCAGCAAACGCAGGCTGACACAATTCAGACGACTGTTCATCCACATCATTTGCTGCATACGAAGCAGGAGCCAGGGACAACGAACAATTCGCCTAAAGCGGTTTATTCGCAGACGGAGTTGCTAAATACAAACACGATGGTGACGTCACAGCCTCCAGCCGTGGTTAAGGAGCGGCCGTACTCTTGCGGAGAGTGTGGCAAATCGTTTCTGCTAAAACACCACTTAACTACACATGCGAGAGTGCATACTGGTGAGAGACCACACGTGTGCGCCCATTGTGGAAAAGCTTTCGCCCGCAAACATTGCCTCAACACTCACCTGTTACTACATTCAGCGGATCGGCCGTACAGGTGTCATGAATGTAAAATGGCGTTCACATTGAAACATCACCTTGTTACGCATTCTAGGGTACACAGCCGTGATCGACCGTTCGTGTGCCACGAATGCGGGCGCGGGTTCCCGCTGAAGCGCCACCTTGTGACGCACAGCAAGTACCACGCTGGCGAGCGGCCCTACGTCTGCTCCGACTGTGGGGAGAGCTTTGCGCAAAAGGAACATCTTGTAATGCACAGTCGGTTTCACGGCTCGTTGTCACCGTACGTGTGCAGTGACTGTGGTGTAACATTCGCTCGCAAGTTCCAGCTCGTGAACCACGGGCGTGTGCACGGCAGGGTCCCGCACGCCTGTCCCGTCTGCGGGAAGGAGTTCCTGCAGAAGAGAACCCTTGTGGCACACATGAAAGTCCATACGGGTGAAGGAGCAGTAGCATGCTTAGAATGCGGAGAAGCCTTCAAATGTAAACCGGATTTGCTAGAGCACTATAAAATGACGCGACATTGTTTAAGTGCATCTCAAACTCAACAGCAACAACAACAGCAACAACAGCAGCAGCAAGCACAACAGCAAGCTCAACAACAAGCACAGCAACAGGCCCAGCAACAAGCTCAGCAACAAGCGCAACAACAAGCACAGCAACAAGCGCAACAACAGCAACAACAACAAGTTACAGTTATAAAACAAGATGACTTCAAGCCACAGATTGTACagGTAATAGGTGCTGACGGCCAAATAGTTAGTGAAAAAACAACGCCTGGTTATTCTTGTCCTGAATGTGGTTCCTGCTTCAATACTAAGGAGGCGCTGTCGCTGCACGTGCGTCTGCACGCGGGCGACCGCACGTGCGTCACCGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACGCCTCGCACGCGCAGCATCAACCAATTCAGATAATATCATCAAATCCCAACAATGTTGTTCACACGCAAGTTATAGCTACAAATCATCACGTGACGTCTCCACGGCCGAAAATACATTTCTGCGGCGAGTGTGGAAAAGGTTTCGCAGCTAAACATGGTCTATTAGCACATCAAAGAAGGCATCCCGATGGCAGCTGTACCCTCCGCACCCACGTGTGCGACCAATGTGGGAAGGCCTTCTTCCAGAAGAATCATCTTATGTTGCATCAGAGACAGCATATGGACCTGCCGCCCAGAACTGTACCCGTATGTGTATCCCgtatatacaaaaatCAACAAGTACAACCCGTATCGCAACAAGCGCAACAACAAGCCCAACAACAAGCTCAACAGCAAGCCCAGCAGCAAGCGCAACAACAAGCTCAGCAACAAGCAGCGCAACAGGCGGCGCAACAAGCGCAGCAAGTTCAACAGCAGGTGCAACAGCAagttcaacaacaacaacaccagcagcaacaacaacaacatcagAATAGCCTTGAGATGGATCAAGACCATCAACAGGCAACACACATACAAGTAGTTACAAACAGATCTGGGCAAGTGATAGGCAATCAAATAGTTGTGGGCACCGTGGGCGTGGGCCGCCGGTTGGTGACACCGCAGCTGCACATAGTGGGCAGAGACACCAAGCCGCAGATCACTCACATACCACACACGAAACACCATAATGCTAGACAACATACTACCAGTGGTGACGCTAAAGACATCGGCGGTCTAGTCCTGTCCGCGGGTCGGAACGGGCTCATCAAGTACGAGATCTCACTGCCGCCGCAACCGACTTCCGTGGTCCAAGTGCAGCAGTTAGACTGA
Protein Sequence
MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSTNKPQVQEKVGAVTVAVSNSGAQLTRVVTSGTPLTGRRAMFVVNDAPAHTLNRVSQQNQTATIQTTNLASKPFMTPLGPIQLTAEECNEILMKRALQAQGIPTPVIDASQLNHTLLNGSLKSLAEATSQQTQADTIQTTVHPHHLLHTKQEPGTTNNSPKAVYSQTELLNTNTMVTSQPPAVVKERPYSCGECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCHECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCSDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKVHTGEGAVACLECGEAFKCKPDLLEHYKMTRHCLSASQTQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQVTVIKQDDFKPQIVQVIGADGQIVSEKTTPGYSCPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAHASHAQHQPIQIISSNPNNVVHTQVIATNHHVTSPRPKIHFCGECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRTVPVCVSRIYKNQQVQPVSQQAQQQAQQQAQQQAQQQAQQQAQQQAAQQAAQQAQQVQQQVQQQVQQQQHQQQQQQHQNSLEMDQDHQQATHIQVVTNRSGQVIGNQIVVGTVGVGRRLVTPQLHIVGRDTKPQITHIPHTKHHNARQHTTSGDAKDIGGLVLSAGRNGLIKYEISLPPQPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932957;
90% Identity
iTF_01360924;
80% Identity
-