Apln008122.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctia plantaginis
Gene Symbol
L
Assembly
None
Location
CADEBC010000503.1:12372374-12387056[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3e-06 8.3e-05 22.9 1.7 1 23 89 111 89 111 0.99
2 16 0.57 35 5.2 5.8 1 23 117 139 117 139 0.97
3 16 7.7e-06 0.00047 20.5 4.1 1 23 145 167 145 167 0.99
4 16 2.4e-05 0.0015 18.9 0.1 1 23 173 195 173 195 0.98
5 16 0.0011 0.067 13.7 0.0 2 23 211 233 210 233 0.94
6 16 5.4 3.4e+02 2.1 0.1 9 23 264 279 260 279 0.93
7 16 0.27 17 6.2 0.0 3 23 332 352 331 352 0.97
8 16 0.13 7.8 7.2 0.0 2 23 366 387 365 387 0.91
9 16 0.00021 0.013 16.0 0.6 1 23 395 418 395 418 0.95
10 16 0.031 1.9 9.1 0.0 1 23 423 446 423 446 0.92
11 16 0.012 0.77 10.4 0.1 1 23 507 531 507 532 0.94
12 16 0.00018 0.011 16.2 0.1 2 23 593 614 592 614 0.96
13 16 0.053 3.2 8.4 0.0 1 23 622 644 622 644 0.97
14 16 0.79 49 4.7 0.3 1 23 748 770 748 770 0.94
15 16 0.0032 0.19 12.3 0.1 1 20 778 797 778 800 0.95
16 16 0.14 8.5 7.1 0.3 1 23 807 829 807 829 0.94

Sequence Information

Coding Sequence
ATGGAAGATCACAACCCCGCTGCCTATATAATAGAAAGAAATAGCCACGACCGCAACCAGCAACGAATGCCGCAATTCCGCCTGCGGCTGCAGTCTGCAGCTCGTCTCGAGGCGCTGGGCAGCGTGGGCAGTACGGCGGGTAGCTCTTGGCCGTCTTCGACGCCAGAGCCGTCACCGTCGCCAGCTTCTACGCCAACTTCCGCCGATGCAGCCGATGGTGAAGCTGAACCGCCTTTTACGCTCGGCGCTACTGAGCATACGCCGTATCAATGTCAATTCTGTGACAAAGCGTTCCCTAGGCTCTCTTACCTTAAGAAACATGAACAGACACATTCTGACCAGATGCCGTTTCGTTGCGAGTTTTGCTCACGACTTTTCAAGCATAAACGTTCCCGAGATCGCCACGTGAAGTTACACACCGGCGATCGCAAATACCGATGCGCGCATTGCGAATCAGCGTTCTCCAGGAGcgaCCACTTAAAGATTCATATGAAGACCCACGATAACCAAAAACCATTCCAATGCACTGTGTGTAACCGCGGGTACAACACTGCAGCAGCTCTCACGTCACACATGCAGGGCCATAAACGGGATCGGGAAGGACGAGAGCCGGACAGACGGCGAGCACTGAGGTGTTTAAGATGCGGCGATGCTTTCCGAAGACCTGACTTGTtgcagGCACATATGGTAAGCGCGCACAGTGTAGATGGTGCTGCGATGACACCACCTCGACGAGTCACCTCTCAGCCACCACCCACTCTTCTTGCCTGCATATACTGCACACGAGACACATTCACTAGTATGGAGCAACTACAGCTTCACGTCCGAGCCGCACATTCCGCATTACTCAACGGTGACCCGTCCttacaatctgtggaacaaccCGCGCCTACTGATCTCAGTCGACGAGCGACCGATGACGGTCCACAAGTAAAACGTCCTCGTTCTGGCTCTGGAACACCTCAAACAACGTTGTCACCCAACACCTTATTGTGTAATCAATGTGACGCTGCTTTGCCTGATTTCGAAGCATTTCGCGCCCATCTGAAAGGGCATCTCGAAGAAGGAGGAGAGTTAAGTCGGTCGAGCCCCGTCCCTTGTGTCCATTGTGGTGCTACATTTGCAGACGCTGCAGCTTCAGAACGTCATCTTACAGCGCATTATTTAGCCGTCTCGTGTGAATACACTTGCCACAGTTGCGCTCGAAGTTTCTCTGCGCCAGATGACTTGCAAAAGCATCTACTGGAATTGCATGCACATCATCTGTACCGTTGCGCTTTGTGTAAAGAAGTATTCGACTCCAAAGTCGCTATTCAGGTGCACTTCGCAGTCGCACACAGCGGGGAGAACAAAGTATGGGTTTGCCGATCCTGTGGGTCGGGGGCTGGTGCTCTTCGGTCGGAGGCCGAGGGTGCGGCGCACGTGCGTACGCGCCACGCTGCGGCAGCTCCGCGCTGCGCCTGCGGAGCGCTCCTCGCGAGCGGAGCGGCTGCACGTGCACCGCGACAGCACCGCGCCTACCGCTGCCCAGTGCCCGCCTGCAACGATGCCTTCGCGGTACAATACTTACTGGAGAGACACATGCAAGCGCACCACGCCATGCCTCATCAGGTTATGAATGGTGAAGTTACAAGACCTAAAAGAGTGGACACTAGTAACAGTGGAGATGTAGGTGACGGAGAGCGATCCCCTTGCACTCCTGGAGCAGAAAATGGTGTCCCAGTTGGGGCGCCAGCTGGTGAAGAACGTCGCCGTAAGAATGGCGCTGTTGCACTTCAATGTGCTTATTGTGGAGAACGGACCCGCAGTCGAGCAGAACTAGAAGCGCACACGCGAGCGCATTCAGGAGCCGCCGCCGCGCGACACAAGTGCTTGATTTGTGACGAAGTTCTACCTTCAGCTGCGGTACTCGCCGAGCACAAGCTCACTCATTGCAAGGTGGTTGCAGGCGATACGTGTGCTCGTTGCCGCGCAAGATTGTTGTCAGAAGAATCTTTTCTAAGCCATATGGCTCGTCATCATCCTGCTCTTCCAGCTCCGTGCGTCGTCTGTCGACAAACGTTAGCTTCCGAAGCTGAAGCGCGTCTTCATGCGCGTTTCCACTTACGACCAGGAGATGATGAGCAGAGATGTGCAATATGTCTTCGCGCACTTCCTGAAGGAGAGGCTGGTGAGGGTGCACGAGCATGTTCAGCCTGCTATGCTCGTCACGCCGCTCCAAGACTCCCACCACCGGCAGATCACGACTGCCGTCTTTGTCGACGCGCTTTGGGATCACCCACGCGGTTACAAGCGCATCTTATCGAACACACATTTGCTGGTATAGGAGCGTTCACCTGTTACCTCTGTTCGGCTGTATTCACAAGTGCAGCAGGCCTCCAACGTCATCTCCCAGAGCATGCATCAGCACCACGACCTTACGACTGCGCGCGATGCGGGCTGAAGTTTTTCTTCCGCGCAGAACTTGACAATCATGCCTTTGTCCATCTGGAAGAGGCTGAGATAGCTCAACGTGCTTTTTATGAAGCGTATGCCCGTGGAGCGGCCACGGCTTGGGCCGCTTTAGTACCTCCAGAACCACCACGTTCTTCTACTCCGCCTCCTGAAGTGAAACTAGAGACGGAGATCAAGGAAGAAAGAGGAAACGATGAATACATTGAGGTGTCGTCACCGCCACCTGTACAAGCACCCCCTCTTGCGCCATCGTCACCCTCACCCGTTATTAAGCAAGAGAAACCTGACGAGGAGTAA
Protein Sequence
MEDHNPAAYIIERNSHDRNQQRMPQFRLRLQSAARLEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADGEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHSVDGAAMTPPRRVTSQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDPSLQSVEQPAPTDLSRRATDDGPQVKRPRSGSGTPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELSRSSPVPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFSAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGSGAGALRSEAEGAAHVRTRHAAAAPRCACGALLASGAAARAPRQHRAYRCPVPACNDAFAVQYLLERHMQAHHAMPHQVMNGEVTRPKRVDTSNSGDVGDGERSPCTPGAENGVPVGAPAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLLSEESFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGDDEQRCAICLRALPEGEAGEGARACSACYARHAAPRLPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALVPPEPPRSSTPPPEVKLETEIKEERGNDEYIEVSSPPPVQAPPLAPSSPSPVIKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00822228;
80% Identity
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