Apln018231.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:732649-750173[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.009 0.56 10.8 3.3 3 20 356 373 354 376 0.94 2 24 0.0022 0.14 12.7 2.3 1 23 450 472 450 472 0.97 3 24 3.3e-05 0.0021 18.5 0.5 1 23 476 498 476 498 0.96 4 24 0.0079 0.49 11.0 3.0 1 23 503 525 503 525 0.98 5 24 2.6 1.6e+02 3.1 0.4 2 10 534 542 534 556 0.79 6 24 0.00084 0.052 14.1 2.0 1 23 563 586 563 586 0.98 7 24 3.8e-05 0.0024 18.3 0.1 1 23 592 614 592 614 0.97 8 24 7.9e-05 0.0049 17.3 0.4 2 23 621 642 620 642 0.96 9 24 2 1.2e+02 3.5 0.5 2 23 838 860 837 860 0.93 10 24 0.027 1.7 9.3 0.3 2 23 987 1009 986 1009 0.93 11 24 5.4e-06 0.00033 21.0 0.3 1 23 1057 1079 1057 1079 0.98 12 24 0.001 0.064 13.8 0.7 1 23 1084 1107 1084 1107 0.96 13 24 5.4 3.3e+02 2.1 0.3 2 12 1115 1125 1115 1127 0.86 14 24 0.00092 0.057 13.9 1.3 1 23 1144 1167 1144 1167 0.95 15 24 8.6e-05 0.0053 17.2 2.7 1 23 1173 1195 1173 1195 0.95 16 24 0.29 18 6.1 0.3 1 23 1253 1279 1253 1279 0.86 17 24 3.1 1.9e+02 2.9 1.4 3 23 1309 1330 1308 1330 0.96 18 24 0.084 5.2 7.8 0.5 2 23 1351 1372 1350 1372 0.95 19 24 3.4 2.1e+02 2.7 0.2 1 23 1376 1398 1376 1398 0.84 20 24 0.16 10 6.9 0.6 1 23 1403 1426 1403 1426 0.89 21 24 2.5 1.5e+02 3.2 1.5 1 23 1432 1455 1432 1455 0.87 22 24 0.00086 0.053 14.0 0.5 2 23 1463 1485 1462 1485 0.96 23 24 1e-05 0.00062 20.1 1.5 1 23 1492 1514 1492 1514 0.98 24 24 0.0002 0.012 16.0 2.9 1 23 1520 1542 1520 1542 0.95
Sequence Information
- Coding Sequence
- ATGTCGTTAGGAAATTCTGAAATTAAGACCTACTTCGGTAGGTGTAGATGCTGCCTCAACTATGGTTACTTGAAAAATATGTGGGAAGAACACAGTTGGCAAGGAGAAAAGGAAGTTTATGTTGAGATGCTTATCCAATGTTTTGCTCTAACCTGGGAGCATTCTGATGAGTCTATGGATCAAGACCAAATATGTGAGACATGTATCACACGGCTCCGTGACGCTGACAGCTTTAAGAAGACTATTTTGCAGTCACAAGAGACACTTTTGGATCATGTTGATGAAGagccCGAGCTGCCAGTTAAAATAGAGAGGCTGGACTATTCAGTTGAAGAATATTCAGAAAGCGAGGCTAGAGCTACCACCAGCAATTACATAGATGATCCAGATGATCCTGACTATGTCGATcctgatgataataatgaccataataattcaaatgaaaTGGATTATGAAGAAGTagagtatttagaaatagaagATAACAAGGAAGCTCTTGCTGGCCAACAAAAAATGCAAACCAAGGACACAGAAGAACGTCGTAACAAAAAACCATCTGTAATTGAGCCAACGAGAAAGTGGCCCAAAAAATTGCCAAAATCTGAACGTTACAAAACGTACAAACAATATACAGAGGAAGATTTACGGAAATGTCTCGAAGCGGTGCGGAAAGAGGAGTTGACACCACAGGAAGCTTCGGAGATATACAACATTCCAAAAAAGACGATATGCTCAAAAGTCAAAGTTGATCCTAACGATATGCAACCTCATCCGTCAAATTCACACATCACAGAGAGAAAGACAAGGACAAAAGATTCGAACAATACCTCTGCAACAACAAAGCGAGGTCACCTAAGGTTACATAATAAGAACAAACAGCAAGAAATAGATACCGTAATACGTAAAAGCCGTCAGCGATCAAATGATGCAAAcgaagaatttataaaatcacaACAAGAGTTAGAAAACCAAGCAATAATGGCTGGCAATCGTTACAATTTGTTACTAATATTGGATCATTCAAACGCTACCATGATTAAAAGCAACTCCTTCAGTAATTTTGGTTGCCATTACTGCAACGAAGTCTTTAATAAACCAGAAGACCTGAAGAGCCATACTCTATGCCACGACCACAATGATATCGTGAAACACGCGTTCAATCCAAAATACTTCGgcaatttaatcataaaactcGATATAACAAACTTACAGTGCTATTTATGCACTAAAATCACCAAATTCTATACCATAGATTCGTTTTAtgaccatttaaaaataattcatgaAAAAAATGCTAACTTAGATGTCAATAATCATATTGTTCCATTTATATTTGGGAGAGAAGGGTATAACTGTGTGATTTGCTCCAAAGAATTCAGcagtttcaaattattatccGACCATATGTGCGAACATAACAGAAATTATACGTGCGATGTATGCGGAAAAccttttataaacaaacagGCACTCCAAACACATAACTATAGGCATCAAGCGGGCGAATATCATTGTTCAAAATGTCCGAAAGTTTTCGACTCAAAACCAAAACGAAACGACCACGAGAGACGTCACTTACGAACTAATAAAAAATGGCGGAAGTGCAAATACTGCGACGAAAGATTTCTATCAAAACTGACAGCTGTCACGCACGAAACTCGGGTTCATGGCGCGAAAAAGCCCTCGTATCAGTGCAAAGCTTGTGACAAAGCATACCACAGTCAACGAAGTCTAGTGCAGCACCAACAGCGCGTTCATTTATTAATAAGGTCGTATATTTGCGAATTTTGCGATAAAGCGTTCTATTCTAAAATTGAACTGACTTGGCATATCGCAATTcatatgcaaataaaaaatatacagtgCAAATTATGCGGTAGCAAGTTTCGTACAAAAGCAGGATTAAGGCAGCACATGTTGGCTCATGTAGGAGATAGAAaacataaatATGACCAGAAAGGCAATACTACAACGGATAAAACCAAACTGGAACCGATTAAAACAATATCGAGGAAAAAACCCACAGTATTTCGCACAGacgttacaaaaaataaagttataaagaaaattaaaagaacaaaaGTTAAAACTGAGGACTGTAAACTAAAAAAGGATGATAAAGAAAAAGATATGACAGAGATAGTGATGAACATTAAAAACGAAGAAAGCGATATAATTGATATTCCTATTAATGCAGATGAAGTTAGAACTAAATACAAAGCTTTAGTTGACGCAAAATTTAAGAAGGAAAGCAAAGAGTCCGAGAAAAATGATGTAAACGAAATGAATAAACACAAAGACAATATTAGAAATATTCTAGAATGTTCCAACGCTACTATGGTCAAAGGCTTTTGGGGAAATGGTTATATGTGCTGCTTTTGTAACGTCCAGAAAGAAGTTCCATCAGAATTAAAAGCACATAATCTTGAAGTGCATGATAACTTGGGAGATAAcgtcataaaagttaaatatgtgTCAGATTTGGTCATACGTTTAGACATTACTAATCTCAAATGTAAATTATGTGAACATAATATAGACAGCTTAGAACTTCTAACGGAACACCTAGTCAAAGAACACGATAAAATTATACACAGAGatataaaaaatcatataattccatttaaatttgaaactaaCACATTACAATGTGTTAAGTATGGACAATGGAAAAACACTGAGGGGACAGCTGAAAGACGGACAGGTTCCCGAAAAGTTTTAAACagagaaattatatttaaattcaaggATAACGTTCGAAATATTCTAGAAAATTCTAACGCCACACCCGTGAAAGGCCACTGGGGAATTGGTTATGGATGTTCCTATTGTCCATACCAGAATCCCTCAGCTCTAGACCTTAAAATGCATACTCTGAATACACATCCAGACGTTATAGAAGTTCTTAAAGTTAAAAACTAtgttgatctcattataaaattaGACATTACTGGACTCCAATGCAACGTTTGCTTTGAAAATTTTGCATCTCTGGACAAGTTTACGGACCATTTATCTCTGATCCATGACAAAGAAATGTATACCGACACAATGAAACATATAATACCTTTTAAATTCGACACGGAGTATCTGCAGTGCATAGTATGTTGTAAACAGTTCGATTATTTCAAACATCTAAGTGAACATATGAATGAACATTACAGAAACTATTCATGCGATATTTGTGGCCGGGGCTTTATTAACAAAAGAGCTCTGAAAACTCACCTGATCCGCCATAAAAAGGGCGTGTTTATTTGTTCTTATTGTTCCAAAGTCTTCGACACTAGGATCAAGATGAGGGAACATGAAAGAGTTCTTCACATCAGAGCGTCTAAGACTCGTAAATGTGGATATTGTGACGAGAAATTTATGGATCCTGTTCGAAAGACTTGCCACGAGGTGTCAGTACACGGAGCGCCGACACCATCTTTTGAATGTAAAGCATGTGGGAAGAAATATGATAGTCAGAGAGCTTTGAAGTCACATACGAACCAGTATCATTTGATGCTCAAACTACACACCTGTTCTGATTGTGGAAagggtttttattataaaaatgagttGAAGAGACACGAGGTAAAGCATACTGGGTTGAGGGAGTTCCAGTGTGACGTTTGCCGCAAGTGGTACGACCAACAGTCAGAGACTCTAGATGAGAAGACagttaacaaagaaaaaatgtacCAAATGATACAAGAAGTCAAGACAATCCTAACATACACAAATGCCACTCCATACAAGTCCAAAGCGAACAGATACTACTGCGCGTACTGCTCCACAGaaggtcctttcttcaaagaGGCTGACGAGCTCAGAACTCATACGAGAACAGAGCACGTTAACGATAGAACCCACAAAATTGAATATGCACTAAGACCGCACTGGATGAACGAAACCTTGAAACTAGATATTGATAATTTACTATGCAACGTATGTTGTACGCCATTGTCAACGTGGAATGACATGTTTAaacatcttaaagtacagcATAAAATTATCTTAGATCAAGCGTACACTCGGGTTATACCATACGTTCTGACAAATGACTTACATTGCGCGCTGTGTAAGGAAGGCTTCACTAATTATATGCAGTTAGACGGGCATATGAACGCGCATTACAATAACTACGTTTGTGAGGACTGTGGTGATACATATTTAGCTGCAAATAGGTTGAAACAGCATAAGAAGATCCATGATATCGGCAAATATCCTTGCGGATTGTGTTCCAAAATGTTTAGTTTAGAAAAGTACAGGAAAAAGCACGAAGAACTTGTTCACAAACACGCGACTAAGTTTAAATGCTGGTACTGCGACGACCGTTTCTCTGGAGAATATTTAAGACACCTTCACATTCTGGAGAAGCATAAAGAGAAAGTTAAGAATATTACCTGTGAAGTGTGTGGCAAGACCTTTACATGGCGGCCCTACTACGTCACACATATGCGCAGAAAACATATGGAGGATCCCAAGAAGTTTAGTTGTCAAGAGTGTGATAAAAAGTTCTTCCAACCGTTTGAGTTGAAGGAACATATGTTGCGACACACGGGGGAGAAACATTTTCCTTGTAAGCTATGCAATAAAAGGTTTATTTCCTCAGGGTCTCTGAAACATCATTACTATTGGCACAAGAAAAAAGATGGCGtacaatttattaatgttattgatTAG
- Protein Sequence
- MSLGNSEIKTYFGRCRCCLNYGYLKNMWEEHSWQGEKEVYVEMLIQCFALTWEHSDESMDQDQICETCITRLRDADSFKKTILQSQETLLDHVDEEPELPVKIERLDYSVEEYSESEARATTSNYIDDPDDPDYVDPDDNNDHNNSNEMDYEEVEYLEIEDNKEALAGQQKMQTKDTEERRNKKPSVIEPTRKWPKKLPKSERYKTYKQYTEEDLRKCLEAVRKEELTPQEASEIYNIPKKTICSKVKVDPNDMQPHPSNSHITERKTRTKDSNNTSATTKRGHLRLHNKNKQQEIDTVIRKSRQRSNDANEEFIKSQQELENQAIMAGNRYNLLLILDHSNATMIKSNSFSNFGCHYCNEVFNKPEDLKSHTLCHDHNDIVKHAFNPKYFGNLIIKLDITNLQCYLCTKITKFYTIDSFYDHLKIIHEKNANLDVNNHIVPFIFGREGYNCVICSKEFSSFKLLSDHMCEHNRNYTCDVCGKPFINKQALQTHNYRHQAGEYHCSKCPKVFDSKPKRNDHERRHLRTNKKWRKCKYCDERFLSKLTAVTHETRVHGAKKPSYQCKACDKAYHSQRSLVQHQQRVHLLIRSYICEFCDKAFYSKIELTWHIAIHMQIKNIQCKLCGSKFRTKAGLRQHMLAHVGDRKHKYDQKGNTTTDKTKLEPIKTISRKKPTVFRTDVTKNKVIKKIKRTKVKTEDCKLKKDDKEKDMTEIVMNIKNEESDIIDIPINADEVRTKYKALVDAKFKKESKESEKNDVNEMNKHKDNIRNILECSNATMVKGFWGNGYMCCFCNVQKEVPSELKAHNLEVHDNLGDNVIKVKYVSDLVIRLDITNLKCKLCEHNIDSLELLTEHLVKEHDKIIHRDIKNHIIPFKFETNTLQCVKYGQWKNTEGTAERRTGSRKVLNREIIFKFKDNVRNILENSNATPVKGHWGIGYGCSYCPYQNPSALDLKMHTLNTHPDVIEVLKVKNYVDLIIKLDITGLQCNVCFENFASLDKFTDHLSLIHDKEMYTDTMKHIIPFKFDTEYLQCIVCCKQFDYFKHLSEHMNEHYRNYSCDICGRGFINKRALKTHLIRHKKGVFICSYCSKVFDTRIKMREHERVLHIRASKTRKCGYCDEKFMDPVRKTCHEVSVHGAPTPSFECKACGKKYDSQRALKSHTNQYHLMLKLHTCSDCGKGFYYKNELKRHEVKHTGLREFQCDVCRKWYDQQSETLDEKTVNKEKMYQMIQEVKTILTYTNATPYKSKANRYYCAYCSTEGPFFKEADELRTHTRTEHVNDRTHKIEYALRPHWMNETLKLDIDNLLCNVCCTPLSTWNDMFKHLKVQHKIILDQAYTRVIPYVLTNDLHCALCKEGFTNYMQLDGHMNAHYNNYVCEDCGDTYLAANRLKQHKKIHDIGKYPCGLCSKMFSLEKYRKKHEELVHKHATKFKCWYCDDRFSGEYLRHLHILEKHKEKVKNITCEVCGKTFTWRPYYVTHMRRKHMEDPKKFSCQECDKKFFQPFELKEHMLRHTGEKHFPCKLCNKRFISSGSLKHHYYWHKKKDGVQFINVID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -