Apln014674.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000572.1:456104-459971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.029 1.8 9.2 0.1 5 23 338 356 337 356 0.96 2 12 0.045 2.8 8.6 0.4 3 23 364 384 362 384 0.93 3 12 1.6 97 3.8 0.3 3 23 393 413 391 413 0.89 4 12 9.3e-07 5.7e-05 23.4 0.7 2 23 419 440 419 440 0.98 5 12 0.0024 0.15 12.6 4.3 1 23 446 468 446 468 0.98 6 12 9.8e-06 0.00061 20.1 0.9 1 20 472 491 472 493 0.94 7 12 0.00017 0.01 16.3 0.2 1 23 526 549 526 549 0.95 8 12 0.00094 0.058 13.9 0.0 3 23 558 578 557 578 0.98 9 12 2.4e-05 0.0015 18.9 0.4 1 23 589 611 589 611 0.98 10 12 6.4e-05 0.0039 17.6 4.5 1 23 617 639 617 639 0.98 11 12 0.0024 0.15 12.7 0.3 3 23 647 667 645 667 0.98 12 12 1.6e-05 0.001 19.4 0.8 1 23 673 696 673 696 0.96
Sequence Information
- Coding Sequence
- ATGATTTTACTGGaacaaaatgttaatgaaaagtttcttgAGATCACTACAATAGAGGTTAGAGAAGATGATGGTCTACCACAGAAGTTGTGTAATGACTGTTTCAGTATCATGATTTCTGCTCATCATTTCCGAAAACAGTGCATCAAAATGGATAGCGAGTTGAAATTACAACTTAGTGCTCTATTGGAACAAGAACAACCTGTTTCAGAAAAGCATCAGGATACCCTTCCGAATTCAAGTGAAGCtattgacgatgatgatgatattgcgAATGATCCCGACAAACAGTTAgaatctattataaaaaaagagcctgaaagtgatgatgattattattatgttttggtAATCGATGACCCGAAAGAAAAGAGTAGTGGAGAAAAACTCCAAGATGTTATGCtagaaaataagataaaagtCGAAAGGGAATATTCCGAAGGCATACCTTCTATTACTTATCAACCAGTAGAAACAAAAAGTATTCCACAGAATCAGTTTGAAGATTCAATTGATGCATTCTTAATGTCCAATACAAAAGTGCCAGCAAATGTGCCAGCTACTATTTTAGAAAATGAGGAAGAAAGCCAGGAAACAGATGAATTAGATGGTGCCATGAATATTGATGAAACACAAGACAGTACTTCTCAAGATCCAACTTTAGCACACATTGTGAATGCACAAGACAATCAGATTATCGAGACAATATCTGCTGATGATATAAAAGATCTtggaaacaaaaattatattaaaatactcacAACTACTGACTCTAATGGAACAATTCTTCTTAAGAATAATGACAGGATTCAATATTTGACTGACACACAGCTGGTTACAAATGAAGACGAAGATGAAGATGCCATGTCCCAAGAAGTAATATTCTGTGAAGGAGATGACACCTCTCAGTTTCAAATACTAAAGTATGATGGGTCAGAATTGGTAATAGAATATGCAGATGAAGGACACATATCAACAGTTCTTCAACAAGAAGACGGTACATTTTTATGTGACTGTGGTGAACAGTTTGAGGATTTGGCTGACTATGAGAAACATCAATACAAGCACAATCCTGCTGGAGAACATTTGTGCAGTCTATGTGGCAAAGGATTTGAATCAACTGAGATTTTAACTGGACACATGTTACTGCACAGCAGTAGCggacttttaattaattgtccATTCTGTAATCAGCTCATAAGACGTAATGCATTAACACAACATATCAAGTATggacacaataatataaaaccacGCTGTAATGTTTGCTTAAAGACATTTGCTAATCCAAATAACTTAAAACGTCATATGATGATCCATAGTGGTATTAGAGAATTTGAgtgtgatatttgttttaaaagattcCACCAGAAAATAACCATGCAGACACATAGATTGACTCACATGCATCCATATTCATGCAATCAATGTGAAAAAACGTTCCAGACTAAGAGTAACTTGACTGCACACAAAGAGTCCAATGAGTGTACTAAATCCAAAGTGATTAAAGTTAAAGAAGAACTAATGAAGACCGTCAAGCAAGAAATTACCACAAACCTGGGTAAACTTTTAGGATATGCTTGTTCTTTATGCAAGAAAATGTTTTCCGTTGAATCTGCCTTAGAACAACATGTTGAAAGCACACATATTGTGGACCCAACAGACCTACTTTGTTCAGAATGTGGTGAAGTACTACCAAATAAGAGAGACATGCAAGCTCACATTGcaacacataaaaatatgaaagcaaAGAATGCAAAGAGATTTGAATGTAGCATTTGCGGTAAGGGATGCTCAAGCCAGGCTATGTTATTAATGCATGAAAGAGTCCACACTAATGAGCGGCCGTTCCCTTGCCAACTTTGTTCTCTTCGGTTCAAGACTAAAACTCATTTACGGACTCACCAATTGACTCATACAAGAGAAAAGAAGTTTGGTTGTTCAGTTTGTATGaaattttttgctttaaaaggTAATTTAGTTGTACATTTGCGAACTCACACTGGAGAAAGGCCATATGTTTGTTCTTTGTGCGGAGAGGCATTCATAGATTCTAAATATCTGAAGAAGCATAAACTAAAGAAACATGCTATAGACAATGTTCCATGGAACCAATATTAA
- Protein Sequence
- MILLEQNVNEKFLEITTIEVREDDGLPQKLCNDCFSIMISAHHFRKQCIKMDSELKLQLSALLEQEQPVSEKHQDTLPNSSEAIDDDDDIANDPDKQLESIIKKEPESDDDYYYVLVIDDPKEKSSGEKLQDVMLENKIKVEREYSEGIPSITYQPVETKSIPQNQFEDSIDAFLMSNTKVPANVPATILENEEESQETDELDGAMNIDETQDSTSQDPTLAHIVNAQDNQIIETISADDIKDLGNKNYIKILTTTDSNGTILLKNNDRIQYLTDTQLVTNEDEDEDAMSQEVIFCEGDDTSQFQILKYDGSELVIEYADEGHISTVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCSLCGKGFESTEILTGHMLLHSSSGLLINCPFCNQLIRRNALTQHIKYGHNNIKPRCNVCLKTFANPNNLKRHMMIHSGIREFECDICFKRFHQKITMQTHRLTHMHPYSCNQCEKTFQTKSNLTAHKESNECTKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHVESTHIVDPTDLLCSECGEVLPNKRDMQAHIATHKNMKAKNAKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHAIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198026;
- 90% Identity
- iTF_00824079;
- 80% Identity
- -