Apln018260.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1241488-1244406[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00087 0.054 14.0 1.2 1 23 52 75 52 75 0.94 2 17 0.13 8 7.2 0.6 2 23 102 124 101 124 0.96 3 17 0.031 1.9 9.1 3.4 2 23 147 168 146 168 0.96 4 17 0.0032 0.2 12.3 0.0 1 23 172 194 172 194 0.94 5 17 0.00012 0.0075 16.7 1.0 1 23 199 222 199 222 0.98 6 17 0.0038 0.24 12.0 1.1 2 23 230 252 229 252 0.97 7 17 7.6e-05 0.0047 17.3 0.9 2 23 260 282 260 282 0.96 8 17 0.0009 0.056 14.0 3.3 1 23 288 310 288 310 0.97 9 17 4.4e-05 0.0027 18.1 3.3 1 23 316 338 316 338 0.98 10 17 0.005 0.31 11.6 0.3 2 23 473 495 472 495 0.96 11 17 0.055 3.4 8.4 0.4 1 23 543 565 543 565 0.94 12 17 0.00097 0.06 13.9 1.9 1 23 570 593 570 593 0.98 13 17 0.027 1.7 9.3 0.5 2 23 600 622 600 622 0.93 14 17 0.0028 0.17 12.4 1.1 2 23 630 652 630 652 0.96 15 17 6.4e-05 0.0039 17.6 1.4 1 23 658 680 658 680 0.98 16 17 1.6e-05 0.001 19.5 2.8 1 23 686 708 686 708 0.98 17 17 2.2e-05 0.0013 19.1 4.4 1 23 714 737 714 737 0.98
Sequence Information
- Coding Sequence
- ATGACAGAGACATCAGAAAGTGAGGAAGAAAATATCACAtgtgttcaaaataaaataactcccAGAACTGAACTGGTCAAACACCGTTCCAATATTAAGGAAATACTCGAAAATTCAAACGCCACACCTATAAGACGCTACGGAGGCATTGGTTACACCTGCTGCTACTGTGAGGAGCAGTACATAAACCCTGCAGatctaaaaaaacatacattagaGAGTCACGATGATCTATCACAAGCTAATTTTATGAAGAACATGAATATGTCTGAATATGTTGTAAAACTTGATGTGACTGCGCTTAAATGTAAACTATGTCAAACGGACATCGATACGCTAGACAACTTCGTAGAGCATTTAAAAAGCAAACACGGGAAATGCTTATTTATGGACGTCAAAACCCACATATTTCCATTGAAATTTGACGGTGACATACTCAACTGTACGAATTGTTCAAACTCTTTCAACAAATTTAGAATGTTAGTCAGACATATGCACATTCACTACCGTAATTTTATCTGTACTATTTGCGATGCAGGCTTCGTTAATCGTAACGCGTTAGCCCAACATTCTGAGAATCATAGAGTTGGAGAATACACTTGTGATTATTGTCCCAAGGTCTACACTACCCAAGTGAAGAAACGGCTTCATGAAAGAACTGCCCACACACATACGAACACAATGAACAAATGTAGTTACTGTACAGAAACATTTAAAGACTACAGGAAGAGAGAAGCTCACCTGGAAACCATACACGGCATTAAATCTGTAATTGCAAAGTGTCAGGCGTGTGATAAAGTTTTTACCAATAGGAAGTTGCTAAACATTCACGTTAAAAGAGATCATTTGATGGAAAGACCACATAAGTGTTCCGAATGTGACATGAAGTTCTTTTCGACCACGGGCCTGAAAAACCACATGGTGAAACATACAGGATCCAGGGCATATCATTGCAGTATTTGTCTTAAGTCTTATGGCAGAAAGAAGACGTTAAATTCTCACATGCGTATACATGAAAAAGAAAGATTTAAGTGTGGTCCTAAAGCAGACACTCGTAAAGTTAAAGCTGAAGAGAAATCTATCcgtaacattaaaaacaatgaaGGAACTACAAGATTCAAAACAGATTTTGTCAAGGCGagagaaaaaaaagtaatatatcaaCCTGAACCCaaaaattatgaattacaaAAGCATCGAACTAATATAAGAGAAGTGATACTCTGGTCAAACGCGACCCCCATCCGACGTTACGGAGGCATGGGGTATATGTGTTGCTACTGCAATAATCATTACCTAGAACCTACAGATTTGAAAAATCATACATTAGAAACACACCAAGATGTCCAAAAAGCATGTTTTATGGTCAAAGTTAGCATGGACCAGTTCGTCATAAGATTAGACATTACGTTGCTGCGATGTAAGATATGTGATATAGATCTAGACACACTGGAACATCTTATGGACCATTTGAAGGTTGACCatgaaaaaactatttataccgATATAAAAAACCACATAATTCCGTTCAAGTTTGATACAGAAATTCTTCGTTGTTGCATTTGCATGAACCCTTTTAGTAAATTCAAAATACTACTCGAACACATGAGTCTACACTATAGAAATTATATATGTGATGTCTGTGATGTAGGTTTCATAACTTCACAAGGCCTCAAATGCCATAAGCTCATTCATAAAACTGGTACATTCAAATGTGATCACTGCTCTTTAGTTTTCGACACTAACGTTAAAAGGAACGCACATGTTCGAACAATGCATTCGTCAAAACCTGTTGcaaaatgtttgtattgtaATGAGGTCTTTAAAGATTATAGAAAAAAAGAGGCACATTTAGTAATGATGCACGGTTTGAAAGTACCTACTCCTAAGTGTCAAGCGTgtgaaaaagtatttaagaatAGAAAAGTATTGAGTCTTCATATAAAGAGAGATCACTTACTGGATCGACGCCATAAATGCTTAGAATGCGGCATGGGCTTCTTCCAGTCCACGGAACTAAAAGACCATATGATAAAGCATACAGGACTAAGATCTTTTACTTGCACTGTCTGCTTAAAAGCCTTCTGTAGGGCAAAGACACTGAAGGAGCATATGAAAATACATGATGATGTAAGAAGATTTAAGTGTGAACACTGTGGTCAGGCGTTTGTTCAGAAGTGTAGTTGGAGAATTCATATGAGGTCTAAACATggagaaattgtgtaa
- Protein Sequence
- MTETSESEEENITCVQNKITPRTELVKHRSNIKEILENSNATPIRRYGGIGYTCCYCEEQYINPADLKKHTLESHDDLSQANFMKNMNMSEYVVKLDVTALKCKLCQTDIDTLDNFVEHLKSKHGKCLFMDVKTHIFPLKFDGDILNCTNCSNSFNKFRMLVRHMHIHYRNFICTICDAGFVNRNALAQHSENHRVGEYTCDYCPKVYTTQVKKRLHERTAHTHTNTMNKCSYCTETFKDYRKREAHLETIHGIKSVIAKCQACDKVFTNRKLLNIHVKRDHLMERPHKCSECDMKFFSTTGLKNHMVKHTGSRAYHCSICLKSYGRKKTLNSHMRIHEKERFKCGPKADTRKVKAEEKSIRNIKNNEGTTRFKTDFVKAREKKVIYQPEPKNYELQKHRTNIREVILWSNATPIRRYGGMGYMCCYCNNHYLEPTDLKNHTLETHQDVQKACFMVKVSMDQFVIRLDITLLRCKICDIDLDTLEHLMDHLKVDHEKTIYTDIKNHIIPFKFDTEILRCCICMNPFSKFKILLEHMSLHYRNYICDVCDVGFITSQGLKCHKLIHKTGTFKCDHCSLVFDTNVKRNAHVRTMHSSKPVAKCLYCNEVFKDYRKKEAHLVMMHGLKVPTPKCQACEKVFKNRKVLSLHIKRDHLLDRRHKCLECGMGFFQSTELKDHMIKHTGLRSFTCTVCLKAFCRAKTLKEHMKIHDDVRRFKCEHCGQAFVQKCSWRIHMRSKHGEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -