Apln018262.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1247209-1251418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.013 0.81 10.3 0.0 1 23 41 64 41 64 0.93 2 19 0.059 3.6 8.3 0.0 2 23 91 113 90 113 0.95 3 19 0.0019 0.12 13.0 2.0 2 23 136 157 135 157 0.97 4 19 0.14 8.8 7.0 0.2 1 23 161 183 161 183 0.93 5 19 0.033 2 9.1 4.3 1 23 188 211 188 211 0.96 6 19 0.61 37 5.1 0.9 2 19 219 236 218 241 0.76 7 19 1.5e-05 0.00092 19.6 1.8 2 23 249 271 248 271 0.96 8 19 0.00027 0.017 15.6 0.9 1 23 277 299 277 299 0.98 9 19 8.2e-06 0.00051 20.4 1.3 1 23 305 327 305 327 0.99 10 19 0.071 4.4 8.0 4.2 1 19 392 410 392 415 0.94 11 19 0.012 0.74 10.4 0.6 2 23 442 464 441 464 0.95 12 19 0.55 34 5.2 2.3 2 23 487 508 486 508 0.96 13 19 0.00097 0.06 13.9 0.3 1 19 512 530 512 534 0.95 14 19 0.0033 0.2 12.2 2.3 1 23 539 562 539 562 0.96 15 19 0.19 12 6.7 1.1 1 23 569 592 569 592 0.95 16 19 0.00026 0.016 15.7 2.4 2 23 600 622 599 622 0.96 17 19 1.1e-05 0.00067 20.0 0.6 1 23 628 650 628 650 0.97 18 19 4.6e-06 0.00028 21.2 0.5 2 23 657 678 656 678 0.97 19 19 0.00011 0.0069 16.8 2.9 1 23 684 707 684 707 0.97
Sequence Information
- Coding Sequence
- ATGGATAGTGAAAAACGAATGAAACCCAGAATATATGAGTTGGAAAAGCACCGCAGTAACGTACGAATTATCCTTCAATGTTCAAACGCAACCCCCATTCGATGTATGGGCGGCATCGGTTACGCCTGCAGCTTTTGTGGAGACGAGTACCCAGACCCTGCAGacttaaaaaaacacacaatcGAGGCACATGacgataaaactaaattaaaatttatggctGGAAAAATGATGTTTTCATATTTAGTTAAACTAGATATTACAAATTTACGTTGTAACATATGCGATGCTCAAATCGAATCGTTAGATCTTTTAACCGATCATCTCCTCAAAGACCATGGAAAACCACTGCATACAGATATCAAAAGCCACATAATGCCTTTTAAGTTCGTTGATGACGTCCTTAAATGTATGTTCTGCTCAAAcgtgtttaataaatttaaaaatttgcaacAGCACATGAACGTTCACTTTAGAAATTTCGTTTGCGAGTTTTGTGATGCCGGTTTCATTAACAGGCATATCCTATCCGCCCATACAGAAGCGCACAAACTGGGAACATTTAAATGCGATCTGTGTTCGAAAGTGTTCGACACgcatagaaaaaagaaaagccaCGAGAAATCTGTTCATGTACACGCGAATTTACTCAGCAAATGcggttattgtaatttaaaatttacaaactatAAAAGGCGGGACCTTCATTTAGTTAAAGTACACGGTGTACACATAAAAGCCGTTAAATGTCACGCTTGTGACAAGTCATTTGACAATAAAAGCGCGTTAACGATACACACTAAACGAGATCATTTGATGGAACGAAGATTCAAATGTACAGAGTGTGATATGAACTTTTTTGGTTCTAATGAGCTTAAATTGCATATGGTTAAACATACGGGCTTGAGAGAGTTCAAATGTGATGTATGTTTAAAATCTTATGGGAGAAAGAAAACTTTGACAGAACACATGAGGATACACAATGATGATAGGAGATTTAAATGTGAAGAAGACGAAACTGTCAATATTGGATCTCAAACTTCTAACAGAGTTCTTAATACTATGGCAACTATTAACGATATTAGAGGGGAAGTTGctaaaaatcaaaacaacttgacacaaatactCAAGTACACAAATGCGACGCCAATACTCCGGCAATCTGAGATCGGATATGTTTGCTATTTCTGCGACAAACAATGTCGCGATCCAGCCGCACTAAAGACACATTGCTTGGAATTCCATGGGAATGGTAAACCACGATCTGCGCATATGAGGCAAAAGAATATATCCTTCTATGTGAAATTGGATATCACTGGACTCAGAtgcaatatttgtaataaaaatatgaatacgcTGGAAGGATTATTTAATCATCTGAAGAATGAACaccaaaagaaaatatttacggatcataagaatttaattataccatTCAAGTTCGACACTGAGACTTTAAGTTGTTACATATGCTTGaatatatttgaaaagtttaaaaaattaatggaACATATGCACACGCATTATGGGAATTATGTGTGTGAAATATGTGGACTTGGTTTTGTTACACAAGGCTCGCTAGTCAGTCATTCCGAGTGCCATAAAGTAGGCAATTTCGAATGCGATGTCTGCCACAAACCATTTAATACCTTGTACAAGAAAAATAGTCACGTAAAAAACGTTCATAAACCAAAAAATGAAAGGTTTAGGTGTGCTTTTTGCACTGAGAAGTTTACGGAAGCACAGAAGAGAAATGTGCATTTATCGAAGGTCCATGGAATAACAAATCATCATATCAAATGTCGATCTTGCGACAAAACCTTTAGCTCTAAATGGTCTATGACACTACACACAAGACGACAGCATCTAAtggaaaaaagatttaaatgttCTGATTGTGATATGAGTTTCTTTTCTGCGGATGAACTAAACAAGCATGGTTTAAAACATTCCGGCGTGAAAGAGTTGAAATGTGACGTCTGCTCGAAGTCTTATGCGAGACGGACAACTTTGATAGAACATATGAGAATACATAATGATGACAGGCGATTCAAATGTGAATATTGCGGACAAGCGTTTGTACAAAAGTGTAGTTGGAAAGGTCATATGAAGAATAAGCATGGCCAAATCGtgtcataa
- Protein Sequence
- MDSEKRMKPRIYELEKHRSNVRIILQCSNATPIRCMGGIGYACSFCGDEYPDPADLKKHTIEAHDDKTKLKFMAGKMMFSYLVKLDITNLRCNICDAQIESLDLLTDHLLKDHGKPLHTDIKSHIMPFKFVDDVLKCMFCSNVFNKFKNLQQHMNVHFRNFVCEFCDAGFINRHILSAHTEAHKLGTFKCDLCSKVFDTHRKKKSHEKSVHVHANLLSKCGYCNLKFTNYKRRDLHLVKVHGVHIKAVKCHACDKSFDNKSALTIHTKRDHLMERRFKCTECDMNFFGSNELKLHMVKHTGLREFKCDVCLKSYGRKKTLTEHMRIHNDDRRFKCEEDETVNIGSQTSNRVLNTMATINDIRGEVAKNQNNLTQILKYTNATPILRQSEIGYVCYFCDKQCRDPAALKTHCLEFHGNGKPRSAHMRQKNISFYVKLDITGLRCNICNKNMNTLEGLFNHLKNEHQKKIFTDHKNLIIPFKFDTETLSCYICLNIFEKFKKLMEHMHTHYGNYVCEICGLGFVTQGSLVSHSECHKVGNFECDVCHKPFNTLYKKNSHVKNVHKPKNERFRCAFCTEKFTEAQKRNVHLSKVHGITNHHIKCRSCDKTFSSKWSMTLHTRRQHLMEKRFKCSDCDMSFFSADELNKHGLKHSGVKELKCDVCSKSYARRTTLIEHMRIHNDDRRFKCEYCGQAFVQKCSWKGHMKNKHGQIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -