Apln018270.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1340345-1352356[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.00048 0.03 14.8 1.1 1 23 106 129 106 129 0.95 2 26 0.048 2.9 8.5 1.3 2 23 160 181 159 181 0.95 3 26 0.012 0.74 10.4 3.6 1 23 202 225 202 225 0.97 4 26 0.00049 0.03 14.8 0.3 1 23 230 253 230 253 0.93 5 26 8.4e-05 0.0052 17.2 0.9 1 23 258 281 258 281 0.97 6 26 0.92 57 4.5 1.0 2 23 287 309 286 309 0.89 7 26 3.1e-05 0.0019 18.6 4.9 1 23 317 340 317 340 0.98 8 26 0.013 0.78 10.4 2.5 1 23 346 368 346 368 0.97 9 26 1.7e-05 0.001 19.4 1.5 1 23 374 396 374 396 0.98 10 26 1.5 95 3.8 3.2 1 23 438 461 438 461 0.92 11 26 2.7 1.7e+02 3.0 1.6 3 23 608 629 608 629 0.94 12 26 0.22 13 6.5 1.8 2 23 652 674 651 674 0.94 13 26 0.021 1.3 9.7 0.3 1 23 678 701 678 701 0.93 14 26 8.1e-05 0.005 17.3 0.4 3 23 706 727 705 727 0.93 15 26 0.23 14 6.4 0.1 2 23 733 755 732 755 0.93 16 26 0.013 0.83 10.3 1.9 2 23 763 785 762 785 0.92 17 26 2.7 1.7e+02 3.0 4.6 1 23 833 856 833 856 0.92 18 26 1.7 1e+02 3.7 0.8 3 22 883 902 881 904 0.84 19 26 0.089 5.5 7.7 2.9 2 23 927 949 926 949 0.93 20 26 0.0031 0.19 12.3 0.0 1 23 955 978 955 978 0.94 21 26 5.5e-06 0.00034 20.9 0.4 2 23 984 1006 984 1006 0.96 22 26 0.003 0.19 12.3 0.4 2 23 1012 1034 1011 1034 0.93 23 26 0.0032 0.2 12.2 1.0 1 23 1041 1064 1041 1064 0.96 24 26 0.00035 0.022 15.3 0.3 2 23 1071 1092 1070 1092 0.94 25 26 0.00011 0.0068 16.8 3.2 1 23 1098 1120 1098 1120 0.98 26 26 5.1e-05 0.0031 17.9 0.9 3 23 1128 1148 1126 1149 0.95
Sequence Information
- Coding Sequence
- ATGACAGAAGATATTCTTGTAATGATTGTGGCAAAAAATTTATCCAATGACGAAAAaaggaagaagaaaaaaaccGTGAAGGAACAGGTCGAAGACTTGTCTGTTTCAGAAGAAAAAGATAACAGAAAAAGGGTTATCGAAGATAATACAGATTCTTCTACTTCAGTTGACATGACAAGGAAGAAGAAAAAAGCCGTTGAAAAGACAAAGAAAAGAACTGGTGTCGAAGAGGAAGCTAAAAGAGAGACACGTCACCTTTTATCAGTTATTATAGAGACTTCTACAGCGATGCCGTTTCGCAAAAATGGGAATACATATAGGTGCTTCTATTGTGAAACTAATTTTTACTACGCGTCTGAATTAAGAGCTCACACTCTCAACGAACACAACAATGAAACCAAAAGACAGTTAAAACAGACTATAATCAGAAATGTTGTCAAAAAGAATCTTATTGTTAAATTGGATGTGACCAATCTGACCTGCAAATTATGTTCTGAATCATTCATCACTCTCAAGGACCTCATATTCCATTTCCGTAAACACGATAAAGTTGTAACTGATAATCttgaaaatatgttatgtttaaaaCTATCCGATACTGAATTCAAATGCTTGTATTGCGATAAAGAATTCCCATTCTTTAAGACTTTGTACATACATTTGCACAGAGAGCATGTCAACAGACGCTTCATATGTGAAACTTGCGGCCTTAATTTCACTACCAACCAAGGGTTAAATAACCACACTGCTTACGTTCACAACCAGGGTAGTTTTGTCTGTCCGGATTGTGGCAAAAAGTTTGCCGCTCAACATCTTCGTAGTGCACATATGAAACGTTCCCACGACCCGGAGAACATAAAATGCCATGTATGCAAGGCAATATTCCGAAGTGTAAATCAAAAGGACACTCACTTAGCGAAGGAACATAACATTTGGATCACAAAGGAGTTCAAATGTGACAAGTGCTCCAAGAGCTTTAAATATAACCACATGTTAATGACACACATAAAACGAGTCCATTTAAAAGAGAAGAACTTCACATGTGATCACTGTGGAGATAAATTCTTTGAGAAAAAATTGTTGGAGTTGCATCAAATAAAACATAGCGATGCCAAACCCTATGAATGCAGTACCTGTAACAAACGGTTTCCGAGGAAGAATGCTTTATACAGACATGAGAAGATACACACGGATCCTCAAGCTCCAAAGAAAGCGGACACCGTATTGGAGACAATGAAAAGAACACGCCTACTATTAATAGGTATTCTAGAAAATTCCACAGCTCTACCGTTCAGAAAGATGGGCCAATCATTCAGATGCTTTTATTGTCacacaaacatatattttgcTACGGAACTAAGATCTCACTACGCAGAGAAACATAAAAAggaaaatgtaaaagtatggGTCAAAAGAAACGTTACAAAAAGATATTTCTTAGTGAAATTGGACATAACAGATTTAAGTTACAAAATAGGTACTCAAAAGCTTGCTGATCTACAGGAATTAGCCGACAATCTTTGCGTTCATGGCATAAAATTGAGCAAAGATTTTGGACGACTAATGCATAAAATACTAGAGGAACGCCGAAAAGAAGATTTAGCCACATTACTGACAATAATGATACAATGCACCACTATTACACCCTTCAGATGGCACAAAAGCAAGTACATGTGCTTTTATTGCTGTTCGTTATTCGTAGAAAGCTCCAAACTTAAAGAACACACCGAATCAGACCACCAAGAGATACCAATTGAAGAAGTTATCGTCAGAACTCTGTACAGAAACGGTAAAATCAAAATTGAAGTCTCTGATATTTGGTGTTCCCGTTGCGAAAACCAATTTACCagtttttttgaatatttcaaaCATCTATCCCTCATCCATGGAATATTACTGGATAAAGATACTGTAAAAGCATTTGAATGCTTTCGCCTAGGAGATAATGGAATGTCCTGCTTGGATTGTGGCCAAAATTTCAGATTTTTTGGACCTTTACTCAGTCACAGGCACAAATATCACAACGAACATTTTCTGTGCGAAGTGTGCGGACAAGGTTTCGTTGAAAAGCATAACGTTGACAATCACGTGAAGCAAATACACTGCATCAAAGcctgtaaatattgtaatatgacCTTCCCCACACAGTATTCTTTAAGGAACCATGTAGAAAATGTTCATAGAACGGATAAACTAAAGTGCCCGTTGTGTTCGGAAATTTTGGGGAACAGGTACTTGAAGAAGCGTCACATGGCTTTGGTTCACGACTGTAAAAGTGCGCAAATCGTGTGCGAGTACTGCTCGAAGATATTTACCAGGCACAATAAGTACGTTCAGCATAAATCAAACGTCCATTTCAAAGAAAAGAACTATTACCCGTCATTAACAGCAGACGAAAGATATGCTGAAAAGCGGCGTAAGGACGATCTGACGAAACTGATCACCATCGTATTAGAGAATTCCAACATCATGCCGTTCCGTTGGGCAGCCAACAAGTACATGTGTTTCTTCTGTTGCTGCACTTTTGTTGACAGCGTCCAGCTCAAACAACATACGATAGAAGAACACAAAGATGCCAAATTGAGAAGAGTTTTGAGAACATTGCTTGGCAGTAGTCGCGTTAAGTTAGATACTTCGGAAATTGCATGCAAAAGGTGTTCAAAACATTTCGAGAATTTCGACGTTTTTCTCGATCACGTCTACGAAATACacgatttgaaatttaataaagatattgcTAGATGTCTTTTTACTTTCAACCTGTCAGACGAGGGAATGTCTTGTCACGAATGTGGACAAGAATTTAGATTCTTTGGACCGTTACTCAAGCATGCACACAAGTTCCACAATAAATATAAGACGTTCCTTTGTGAAATATGTGGTCAAGGATTTGTGGCGAAAGCAAACGTAGAGAGTCACATAAAAAATGTTCATAGTTTAAAAGATAGACAATGTCAGAAGTGTGATAAAGTATTTAGGAACCCCTACGCTCTTCAGGTACACCGTGAAAGAGCCCACAGAACTGAGTCTTTGAAGTGCCCAAAATGCCCAGAATATTTTGCGTCGAAGTATCTCAAGAAACGTCATCTAGCGTTAGTACATGATGTCAAAAAACTACAGTTCAGTTGTGACGAATGTGAACGAGTTTATACAATGAAGAGTAGACTAGTCCAGCATAAATTAAGGACGCATTTGAAGCAAAAGACTGTCACTTGCGAGATTTGTGGATTTAAAGTATTCAACAATGATCTGCTGAAGCGACATATGGTTCGCCATGATGACTCCAGACCATTCCAGTGTGAGTTCTGCAAGAAAAGTTTCCAGAGGAAAAAGACTTTGGACGTTCACACACGAATACATACAAATGATAGAAGATATGGATGTAAGGAGTGCGGAAGGGCGTTTGTTCAAGTTACCAGTTATAAGCTTCATATGCGAGTGCATCACAGACTAAACGAGGGATCTTCTTGGAACTGA
- Protein Sequence
- MTEDILVMIVAKNLSNDEKRKKKKTVKEQVEDLSVSEEKDNRKRVIEDNTDSSTSVDMTRKKKKAVEKTKKRTGVEEEAKRETRHLLSVIIETSTAMPFRKNGNTYRCFYCETNFYYASELRAHTLNEHNNETKRQLKQTIIRNVVKKNLIVKLDVTNLTCKLCSESFITLKDLIFHFRKHDKVVTDNLENMLCLKLSDTEFKCLYCDKEFPFFKTLYIHLHREHVNRRFICETCGLNFTTNQGLNNHTAYVHNQGSFVCPDCGKKFAAQHLRSAHMKRSHDPENIKCHVCKAIFRSVNQKDTHLAKEHNIWITKEFKCDKCSKSFKYNHMLMTHIKRVHLKEKNFTCDHCGDKFFEKKLLELHQIKHSDAKPYECSTCNKRFPRKNALYRHEKIHTDPQAPKKADTVLETMKRTRLLLIGILENSTALPFRKMGQSFRCFYCHTNIYFATELRSHYAEKHKKENVKVWVKRNVTKRYFLVKLDITDLSYKIGTQKLADLQELADNLCVHGIKLSKDFGRLMHKILEERRKEDLATLLTIMIQCTTITPFRWHKSKYMCFYCCSLFVESSKLKEHTESDHQEIPIEEVIVRTLYRNGKIKIEVSDIWCSRCENQFTSFFEYFKHLSLIHGILLDKDTVKAFECFRLGDNGMSCLDCGQNFRFFGPLLSHRHKYHNEHFLCEVCGQGFVEKHNVDNHVKQIHCIKACKYCNMTFPTQYSLRNHVENVHRTDKLKCPLCSEILGNRYLKKRHMALVHDCKSAQIVCEYCSKIFTRHNKYVQHKSNVHFKEKNYYPSLTADERYAEKRRKDDLTKLITIVLENSNIMPFRWAANKYMCFFCCCTFVDSVQLKQHTIEEHKDAKLRRVLRTLLGSSRVKLDTSEIACKRCSKHFENFDVFLDHVYEIHDLKFNKDIARCLFTFNLSDEGMSCHECGQEFRFFGPLLKHAHKFHNKYKTFLCEICGQGFVAKANVESHIKNVHSLKDRQCQKCDKVFRNPYALQVHRERAHRTESLKCPKCPEYFASKYLKKRHLALVHDVKKLQFSCDECERVYTMKSRLVQHKLRTHLKQKTVTCEICGFKVFNNDLLKRHMVRHDDSRPFQCEFCKKSFQRKKTLDVHTRIHTNDRRYGCKECGRAFVQVTSYKLHMRVHHRLNEGSSWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -