Apln018224.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- PLAGL2
- Assembly
- None
- Location
- CADEBC010000958.1:647119-650047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.036 2.2 8.9 0.2 1 23 156 178 156 178 0.97 2 20 0.00028 0.017 15.6 0.7 2 23 204 226 203 226 0.96 3 20 0.013 0.8 10.3 0.3 1 23 248 270 248 270 0.97 4 20 2.5e-05 0.0015 18.9 0.2 1 23 274 296 274 296 0.98 5 20 0.00016 0.0096 16.4 0.3 1 23 301 324 301 324 0.95 6 20 0.00011 0.0071 16.8 0.9 2 23 331 353 331 353 0.97 7 20 7.6e-05 0.0047 17.4 1.2 1 23 360 383 360 383 0.98 8 20 0.0011 0.069 13.7 3.0 2 23 390 411 389 411 0.96 9 20 8e-08 4.9e-06 26.7 0.7 1 23 417 439 417 439 0.99 10 20 0.00048 0.03 14.8 0.0 2 23 443 465 443 465 0.95 11 20 0.3 18 6.0 1.4 1 20 470 489 470 492 0.83 12 20 0.024 1.5 9.5 0.1 2 23 520 542 519 542 0.91 13 20 4.9e-05 0.003 18.0 4.3 2 23 566 587 565 587 0.97 14 20 0.031 1.9 9.1 0.3 2 23 591 612 590 612 0.96 15 20 0.0086 0.53 10.9 4.2 1 23 617 640 617 640 0.95 16 20 2.3 1.4e+02 3.2 2.8 2 23 652 674 651 674 0.90 17 20 0.035 2.1 9.0 0.1 1 23 680 703 680 703 0.96 18 20 4.4e-07 2.7e-05 24.4 2.2 2 23 708 729 707 729 0.97 19 20 0.00021 0.013 16.0 2.1 1 23 735 757 735 757 0.97 20 20 0.00054 0.033 14.7 2.6 1 23 763 786 763 786 0.97
Sequence Information
- Coding Sequence
- ATGATTGAAGAATCAGACTCTACATTCACTATGAAAACTGAAGACGGAGAGGATATCAAACTGACTATTCTCAAACATCCAATATCTCTAGAAACTTTAGAGTATGAGGTAGAAACAAGTGGCATAgatgaaaaagaaatacatgAAAAGGCTATCAAGGAGGCCGatgatataaaaaagaaatatgatCTTAAATTCTTAAAGAATATGCCTAAAACAACAGATGCGAAAACAGGAAATCTATACTTATTAAAAGAACCTATatctttagaaaatattaattggaAAGATGAGAAACATGAAATTCAAAATTCTATTACGTTCAGTGTCAAGACTGAACAAGGTTATTTATGCAGAACTACGAACAAGAGGAACAAAAAAGAGGAATATCAATCTTGGAAACAAAATGCGTTGGTTATCTTCGAGTTTTCCTACGTCTACCCTTTCATACACGCGGGCAATAAGTACAAATGTTTTGTTTGCCTAAAGCCCTTTTTAGATGCTAATCTCCTAAATCAACATGTTAATGAACAcagtattaaagaaataaaacgagAACTAAATAATAGGGTTagagataaaaatttaaaagtcgatgttacatatttacaatgtaAAATTTGTTCCCAAACCTTATCTAATTTACAGaatttaaaagaacatttaaaagtCAATCATGATAAGAAGATAGAACTGTCGTTGCAGGATAACATAATTCCTTTCAAGTTAGGTGGAAAACATTTTGATTGTCAAGTGTGCGGAGAGAGGTTTCTCAAACTTAGACTCCTCGTAATCCACATGAGCAAACATTTTAACAATTACAGCTGTGAATTTTGTGGCGCTGTGTTTATATCTCTTAACTTGCTAAAAAGACATCTACAAATTCATGAATCAGGAAGTTTTCCTTGCGATAAATGTGATAAAGTATTCAGTAATGCTGCAAAACGAACCCTACACACTCGTGGAGTCCATCTGAAGCAGTTTCCACGTAGATGTCCCATTTGTTCTGAAAGATTTAACTCAAACTATCAGAGAACAAAACACTTGCGAATAATCCATAACCAAACAACAGGGTTATTTAGATGTGACACTTGTGGGCGTGAATATGACTTAAAATATCATCTCCTAATTCATATAAGATCTGTTCATTTACAAGAAAGAAATCAAGAATGCCCTGTTTGTCATGCTAGATTCTTCTCGAAGTATTGCCTGTCAAGGCACATGGTAATACATACAGGTGACAAGAATTTCAAATGCGAGATTTGTGGGAAAGCATACGCAAGACGAAAAAATTTGAGAGAACATTTGAGATCCCATGAATCTGGCGTGTGTTCGATATGTGGTCAAAATTATGAGGATCAAAACAATTTGGTTGCTCACGTCAACAACGTGCATGCGCAAGCCAATTTTAAGTGCTTTTATTGCAATGAAGTCTTCCCCGAAATCCATTCTGTTCTCCAACACTCCGCGTTCCACGTAACACCAGAAAGATGCTGCTTACTCAAGCAATATTTGAGAAAAGGAAAAAGAGTTATTAAAGTTGATATTTCTGGTTTAAAATGTAGATTATGTGAGCAAAAGTATTCTGATCTCGATGACATCAGAAGACATTTAGCAGGCGCTCATAAGAAGGAATTCAATTCTGCTGGCAATGGACTTATGGCTTATGATTTAACTATGAATAATGGGCAGCTATCTTGCCATAAATGTTCAAAAACATTCAACTCCTTTTTCCTTTTGAATAGGCATATGAACGTACATTTTAACGTGGTCTGTGAAACTTGTGGATTAGGATTCATGTCGCATCAGCGGTTAATAAACCACAGGATTGTACATCAAAATGGTGTACACAAATGCGACAAATGTCAAGAAGTATTCCCTACGAAGCTCAAACTTCGTTACCATTTGTTTAAAAAGCACGAAGTTACAAATGCAAAGAAAATAAAGCCGCTAAAATGTCCTCATTGCTTAGAACGATTTGCAGAACATTATAGGAAAATGACGCATTTGAAAGAAGTTCACGGCATCACTTTTACTTTTGAATGCCCATCATGTAAAGCAGTTTTACCAACACGACGTGCTTTGACTGAACATACAACTAAACTACACACGCAGAAGATACAGTGTAAGATGTGTGGGAAGTGCTTTGGTACACAGTCTTTGCTGAAAATGCACATGAGAGGGCATACCGGAGAGAGGAACTTCTTCTGTGCAATTTGCCAGAAGGCCTACATGCATGAAAGGACGCTGAGGCAACACATGAGAGTACATGGACCAGTGTGGAAGTTCACATGTTCGGAGTGCGGCAGTGGATTTCACAATAGAAACGATTATAATAAGCACATGAAACAATGGCATCCTCAATGGCAGTTCAAAACTATTGTTAAAAATTTCGGAAGTGATCTTATTAACTGA
- Protein Sequence
- MIEESDSTFTMKTEDGEDIKLTILKHPISLETLEYEVETSGIDEKEIHEKAIKEADDIKKKYDLKFLKNMPKTTDAKTGNLYLLKEPISLENINWKDEKHEIQNSITFSVKTEQGYLCRTTNKRNKKEEYQSWKQNALVIFEFSYVYPFIHAGNKYKCFVCLKPFLDANLLNQHVNEHSIKEIKRELNNRVRDKNLKVDVTYLQCKICSQTLSNLQNLKEHLKVNHDKKIELSLQDNIIPFKLGGKHFDCQVCGERFLKLRLLVIHMSKHFNNYSCEFCGAVFISLNLLKRHLQIHESGSFPCDKCDKVFSNAAKRTLHTRGVHLKQFPRRCPICSERFNSNYQRTKHLRIIHNQTTGLFRCDTCGREYDLKYHLLIHIRSVHLQERNQECPVCHARFFSKYCLSRHMVIHTGDKNFKCEICGKAYARRKNLREHLRSHESGVCSICGQNYEDQNNLVAHVNNVHAQANFKCFYCNEVFPEIHSVLQHSAFHVTPERCCLLKQYLRKGKRVIKVDISGLKCRLCEQKYSDLDDIRRHLAGAHKKEFNSAGNGLMAYDLTMNNGQLSCHKCSKTFNSFFLLNRHMNVHFNVVCETCGLGFMSHQRLINHRIVHQNGVHKCDKCQEVFPTKLKLRYHLFKKHEVTNAKKIKPLKCPHCLERFAEHYRKMTHLKEVHGITFTFECPSCKAVLPTRRALTEHTTKLHTQKIQCKMCGKCFGTQSLLKMHMRGHTGERNFFCAICQKAYMHERTLRQHMRVHGPVWKFTCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGSDLIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -