Apln018259.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1230476-1240733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.012 0.75 10.4 2.6 1 23 68 91 68 91 0.93 2 31 0.43 26 5.6 0.1 2 23 236 258 235 258 0.95 3 31 0.014 0.86 10.2 5.1 2 23 281 302 280 302 0.97 4 31 0.0028 0.17 12.4 0.2 1 23 306 328 306 328 0.98 5 31 0.0041 0.25 11.9 2.2 1 23 333 356 333 356 0.95 6 31 0.0044 0.27 11.8 1.5 1 23 363 386 363 386 0.93 7 31 0.00049 0.03 14.8 0.6 2 23 394 416 393 416 0.95 8 31 1.3e-05 0.00081 19.7 0.6 1 23 422 444 422 444 0.96 9 31 0.044 2.7 8.6 0.3 2 23 575 597 574 597 0.96 10 31 0.53 33 5.2 3.0 2 23 620 641 619 641 0.97 11 31 5.2e-05 0.0032 17.9 0.0 1 23 645 667 645 667 0.98 12 31 0.054 3.3 8.4 2.3 1 23 672 695 672 695 0.98 13 31 0.049 3 8.5 0.3 2 23 703 725 703 725 0.91 14 31 0.00038 0.023 15.2 0.8 2 23 733 755 733 755 0.96 15 31 5.8e-06 0.00036 20.9 1.4 1 23 761 783 761 783 0.98 16 31 1.4e-06 8.7e-05 22.8 0.6 1 23 789 811 789 811 0.99 17 31 0.00069 0.042 14.3 1.8 1 23 817 840 817 840 0.98 18 31 0.0032 0.2 12.2 1.9 2 23 957 979 956 980 0.95 19 31 0.47 29 5.4 2.5 2 23 1002 1023 1001 1023 0.96 20 31 6.1e-06 0.00037 20.8 0.0 1 23 1027 1049 1027 1049 0.98 21 31 0.025 1.6 9.4 5.9 1 23 1054 1076 1054 1076 0.98 22 31 0.6 37 5.1 1.2 1 23 1083 1106 1083 1106 0.89 23 31 0.14 8.3 7.1 1.2 1 23 1174 1197 1174 1197 0.94 24 31 0.49 30 5.4 0.1 2 23 1223 1245 1222 1245 0.95 25 31 0.027 1.7 9.3 1.8 2 23 1268 1289 1267 1289 0.97 26 31 0.0021 0.13 12.8 0.2 1 23 1293 1315 1293 1315 0.97 27 31 0.86 53 4.6 0.6 1 23 1320 1343 1320 1343 0.90 28 31 0.0018 0.11 13.0 0.5 2 23 1382 1404 1381 1404 0.96 29 31 6.2e-05 0.0038 17.6 1.9 1 23 1410 1432 1410 1432 0.98 30 31 3.9e-06 0.00024 21.4 2.7 1 23 1439 1461 1439 1461 0.97 31 31 5e-05 0.0031 17.9 4.6 1 23 1467 1490 1467 1490 0.97
Sequence Information
- Coding Sequence
- ATGGGTCGTCCAGCTGTGTCTGTAAAAGTTAAGGAAGAGGAAAACAATTCGGTTGATACGAACATCAATGTGTTATCAGCAAGAAAACGGAAACCACGAATGTCAATCAAACGAGACGATTTGCACAAACATCGAAAGAATATCAAACAAGTGCTGCTTTGCTCGAACGCTACCCCCATCAGACGCAATGGAGACATGGGCTATATGTGCTGCTTCTGTAAGGAGCAATATCGAGATCCTGCTAATTTAAAGCAGCATACATTAGACTACCATAAAGATATCgaaaatgcattttttatgAATGTGACAATGGAACGGTTTGCTGTCAAATTAGATATTACCTGCTTAAAATgtCCCCACGAAGAGTCTACTTTGAAAGTATCTAGCGCAGTTAAGACAGAAGAAATTGGTGCTGATGGTAGAAAGGTTAATTCAACATCCAAACAAAACGTACTTGTACCTGTAGATCGGcaggaaatatttaaacatcggataaatataacaaatatattgcTTTCTTCTAACGCTACGCCTATAAGACGTTATGAAGATATGGGTTATATGTGTTGTTATTGCATCGATCAATATCGAGATCCCGCAGacttaaaaatacacacattagAATGTCATCAAGATGTGCAGCAAGCTTATTTTATGAAACTGGGAATGGAGGCATTTGTCGTCAGGTTGGACATAACATCACTTCGGTGCACAATTTGTAATGCGAGTATGGAGACCCTAGAGAAACTGGTTGAGCATTTAAACTCCGATCATGAGATAGAAATTTTCACTGACGTAAAAAGCCACATAACACCATTTAAATTCATCACAGAAACTCTGCAATGTTGCATTTGCACGCATactttcagtaaatttaaatcgcTGCTAGAACATATGAACATTCATTACAGGAACTACATTTGTAAGCAGTGTGATGGTGGGTTTACTGTTATAGCTAGTTTGAGAGCCCACATGCACGTACACGAAAGTGGCAATTTCAAATGTGAACATTgtttaaaagtatttgaaaCCGCGTCTAAGAAAAGAGCCCATGAGAGAGCTAAGCATGTACATAAGCTAGACGTATACAAGTGTGGGTATTGCAATGAAACCTTTAGTGACCACAGATCTAAGGAAGAACATCTGGTGTCGATCCACGGATTAAAAATGCCCATATCTAAATGTCTGGCATGTAACAAAGTCTTTAGTAATAGACAAGCTTTACGTGTTCATGTAAAGAGAGACCATTTGCTGGAAAGACGACATAACTGCCCAGACTGTGATATGAGTTTTTTCAACGCCAATGCGCTCCAGAggcatattataaaacatacaaaattacgAACTTACAAGTGTGCAGTTTGCTCAAAAGgtgGTCATCCGGTTGTAACGATCAAAGTAGAGAGAGACCACGAACCAGATAATCCCAAAGATAAAGAAACCGTTTCAACAGCCACAAAGACCTCACATATGCCTCTCAAAATAAAGGATATCTTTAAGCATAGGACaaatataaaagaagtaatgcgTTGGTCTAATGCTACTCCTATTAGACGAGTTGGAGATAAAGGTTATGTGTGTTGTTATTGCAATGATCAGTACTTGGAGCCTGAAGGATTAAAGAAACATACTTTAGAAAATCACAACGACGTTCGAAAAGctttctttattaaacatttgtcTAAAGATCGATTTATTGTCAAATTAGATATAACGTCACTAAGGTGCAACATCTGTGACCAAAATATCGATTCATTGgataagtttttgaagcatctGAAAATAGACCATACGAAAACAATTTACACAGACGTGAAAAATCATATCGTCCCTTTCAAGTTTACTACAGAAACACTCCAATGTTGTATTTGCACAAGCTATTTTGATAAGTTCAGAATGTTACTCGAACATATGAACACGCACTACAGGAATTATGTCTGTGATGTTTGCGATGTAGGTTTCGTAAATAGCAGCGGCCTTCAGACTCACATAACTGTACATAATACTGGTATCTTTAAGTGCGGATATTGTGCTCGAATTTTCGATAAGCTTAGTAAGAAGAAAACTCATGAAAGGACCACACATTCTCTAAAACCAAACTTTCGTAAATGTGCGTATTGTAATGAATCCTTCAGTGATTTTAGATTGAAAGAGGCACATTTGATAGAAATGCATGGTTTAAAAGTGCGTACACCCGAATGTCAAGCGtgtgaaaaagtttttaaaagcaGGAAGTCGTTGAGCCTCCACATCCGAAGAGATCATTTAATGGAAAGACAGCATAAGTGTCCAGAATGCGACAAAAGTTTCTTCGAATCTGCTACACTCAAAATTCATATGATTAAACACACAGGAGTACGGtcatttaaatgcaatatttgcTCAAAGGCTTTCAGTAGACCGAATGTTTTGAGGCAGCATATGAACATACACGATGAAACTAGGATGTTTAAATGTGTTCAGTGTGAAAAACCGTTTGCCCAAAATTGTGCCTGGAAAAGTCATATGAAGATTAAACACGGAAgtcGAGTAACAGTCAAAGCGAAGATTCAAAGAAACCAACCGGATGAAGTAGAACAAAAAACTGTTACTCGAAAAACCAGACAAACTCCAATAATGCCATTGAAAACTAAGTCTTTGCCTAAACATCGTGCAAATATAAAAGAAGTTATGCTCTCCTCAAACGCTACACCAATAAGACGTTTTGGAGATATGGGGTTTATGTGCTGTTACTGTGATGATCAGTACCTAGAACCAGCGGAATTAAAACAACATACATTAGAAACTCATCCAGATATCCGAAAAGCTTTCTTCATTACGAAATTAGGGAAAGATCGATTCGTTGTCAAATTGGACATAACTGCACTACGATGTAAAATCTGCGATCGGAACATCGATACCTTAGAACAGTTAATGCATCATCTCAGGGTCGACCATCATAGAACAATATACACCGACATTAAAAACCATATAATCCCGTTTAAGTTCATAACAGATACGTTACAGTGCTGTATTTGTATGAATACGTTTAGTAAATTCAAAATGTTACTCGAACATATGAATATACATTACAGAAATTACATTTGCGATATTTGCGACGTAGGTTTTGTTAATGCTGTCAATTTAACTAATCATATGCTCACGCATGAGAATGGAACATTCAAATGTGATCATTGTTCCCAAGTGTTTAACACAAAGAACAAGAAACGACTACACGAAAGGAAGCATGGCTTTAAAACGTTGCTTTTTAAATGTGGCCACTGTAGTGCTACCTTCAACGAATACAGAAAGAAAGAAGCCCATTTGGCTTTAGAGCATGGACAAGCATACAAGTGCCAGGCATGTACTCAAGCAGACACTGTCAATGTGTTTACAGAAGAAAATCGATCCGATAATACAGAAAGCATAAAACTTACACTTTTACCAATCAATGAGGGTATAAATAAACATAGGACAAATATCAAAGAAGTAATGCGATGGTCAAACGCCACGCCTATAAGGCGGTACGGAGATATGGGTTATACATGCTGCTATTGCaaagaacaatatttaaatcCCGCAGATTTAAAGGCACATACATTAGAAAACCATAAGGACATACAAAAAGCTTTCTTTATGAAATACAGAATGGACCGGTTTGTCGTAAGATTAGATATAACCGCATTAGAATGTACAATTTGTAATCAGTATATCGACACTATCGAAGAACTGTTGGAACACCTTAAATCTCAACACAGAAGACCAATTTACACCGATATTAAAAACCATATCATTCCATTTAAATTCGTCACGGATAAATTACAATGCTGTATATGTGTAAACACGTTTAGTAAATTTAAGATGCTCATAGAACATATGAATATACACTACAGAAATTATATATGTCAAATTTGCGATGTTGGCTTTGTTAATTCTATGAATTTTTCGAGCCACAAGCTAATACACAGTACAGGTACATTTAAATGTGATTACTGCCCTCAAATACTTGATactaaactaaagaaaaaatcgCATGAAAGGGCTATTCACTCTCCAAAAGCGCCATCATTACATAAATGCGGATATTGTATTGAAACTTTTAGTGAATACAGAAAGAAGGAGGCACATTTGGTATTAATGCATGGGTTGAAGATACCTACAGTGAAATGCGAAgcttgtgaaaaaatatttaaaaacagacaGTCATTAAGCGTCCATGTGAAAAGAGACCATTTGCTGGATCGACGACATAAATGCCCTGAATGTAGCAAAGCTTTCTTTTCTACGGGCTATTTGAAAGATCATATGATCAAGCACAGTGGTTCTCAGGCTCAGTTTAATTGTAATGTCTGTTCAAAGGTTTTCTCTagaaagaaaaatttgaaaGAGCATAAGAAAATACATGATGATGTAAGGCAATTTAAATGCGAACATTGTGGGAGGGCGTTCGTGCAGAAATGCAGTTGGAAAAGTCATATGCGAGCTAAACATGcagaaattgtttaa
- Protein Sequence
- MGRPAVSVKVKEEENNSVDTNINVLSARKRKPRMSIKRDDLHKHRKNIKQVLLCSNATPIRRNGDMGYMCCFCKEQYRDPANLKQHTLDYHKDIENAFFMNVTMERFAVKLDITCLKCPHEESTLKVSSAVKTEEIGADGRKVNSTSKQNVLVPVDRQEIFKHRINITNILLSSNATPIRRYEDMGYMCCYCIDQYRDPADLKIHTLECHQDVQQAYFMKLGMEAFVVRLDITSLRCTICNASMETLEKLVEHLNSDHEIEIFTDVKSHITPFKFITETLQCCICTHTFSKFKSLLEHMNIHYRNYICKQCDGGFTVIASLRAHMHVHESGNFKCEHCLKVFETASKKRAHERAKHVHKLDVYKCGYCNETFSDHRSKEEHLVSIHGLKMPISKCLACNKVFSNRQALRVHVKRDHLLERRHNCPDCDMSFFNANALQRHIIKHTKLRTYKCAVCSKGGHPVVTIKVERDHEPDNPKDKETVSTATKTSHMPLKIKDIFKHRTNIKEVMRWSNATPIRRVGDKGYVCCYCNDQYLEPEGLKKHTLENHNDVRKAFFIKHLSKDRFIVKLDITSLRCNICDQNIDSLDKFLKHLKIDHTKTIYTDVKNHIVPFKFTTETLQCCICTSYFDKFRMLLEHMNTHYRNYVCDVCDVGFVNSSGLQTHITVHNTGIFKCGYCARIFDKLSKKKTHERTTHSLKPNFRKCAYCNESFSDFRLKEAHLIEMHGLKVRTPECQACEKVFKSRKSLSLHIRRDHLMERQHKCPECDKSFFESATLKIHMIKHTGVRSFKCNICSKAFSRPNVLRQHMNIHDETRMFKCVQCEKPFAQNCAWKSHMKIKHGSRVTVKAKIQRNQPDEVEQKTVTRKTRQTPIMPLKTKSLPKHRANIKEVMLSSNATPIRRFGDMGFMCCYCDDQYLEPAELKQHTLETHPDIRKAFFITKLGKDRFVVKLDITALRCKICDRNIDTLEQLMHHLRVDHHRTIYTDIKNHIIPFKFITDTLQCCICMNTFSKFKMLLEHMNIHYRNYICDICDVGFVNAVNLTNHMLTHENGTFKCDHCSQVFNTKNKKRLHERKHGFKTLLFKCGHCSATFNEYRKKEAHLALEHGQAYKCQACTQADTVNVFTEENRSDNTESIKLTLLPINEGINKHRTNIKEVMRWSNATPIRRYGDMGYTCCYCKEQYLNPADLKAHTLENHKDIQKAFFMKYRMDRFVVRLDITALECTICNQYIDTIEELLEHLKSQHRRPIYTDIKNHIIPFKFVTDKLQCCICVNTFSKFKMLIEHMNIHYRNYICQICDVGFVNSMNFSSHKLIHSTGTFKCDYCPQILDTKLKKKSHERAIHSPKAPSLHKCGYCIETFSEYRKKEAHLVLMHGLKIPTVKCEACEKIFKNRQSLSVHVKRDHLLDRRHKCPECSKAFFSTGYLKDHMIKHSGSQAQFNCNVCSKVFSRKKNLKEHKKIHDDVRQFKCEHCGRAFVQKCSWKSHMRAKHAEIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -