Apln018285.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000958.1:1593575-1601889[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-07 0.00017 21.2 0.0 3 40 16 53 14 58 0.89 2 2 1.4 8.9e+02 -0.3 0.0 12 23 126 137 124 137 0.88
Sequence Information
- Coding Sequence
- atgaaacgTTCGCAAAAAAGAAAACGGGGCTCAGGATGGTCTCAAACTGATCTACAGAATGCTCTAGATGACATAAAAAACAACCGAATATCTGAGCGCGCAGcagcattaaaatataatataccaaGGCGAACGTTAAAGAATCACATAAAATCTGGAAGCGTGGTGAAGAGACTGGGAAGAAAAGCTGTTTTTACCGACACACAGGAAAAAGAATTGGTAGAAAGAATTAAGAAGTTTTCAAATATAGGCATGCCTTTAACACCAAAAATAATACGTAAACAAGcttacttattttgtaaaagaaacaatataaaaaatccttttagtGACAAAAAATCGACTGCTGGCAAGAAATGGCTTTACAATTTCCTCGTACTAAATAAAGACATATCTCAACGTAAAGCACAATTCATGAACCCTGCGAGGGCTCAGAAATTAAATAAGCATATAGTTGACAAACATTTCAAAGCCATTAGGGAAATATATGATGAGTTAAATATTGACCAACACCCTGAACGATTATATAATGTGGACGAAAAAGGGTGCCGATTAACAATACATAGGCAAAAGAAAGTCTTGGCTGGAAGAGGTTCTCGAAGGGTTCATCTTATAGCACAAGAACATGCCGAAAATGTGACTATAGCACCTTGCGTAAATGCTACTGGAAACGCCATTCCACCAAtgattgtttttaaaggaaaaagacTGCGGGAAGaatttttggaaaatttacCAGCTGGTTCTTTGGTGAAAATGACACCAAAAGGTTCTATGACAACAGAGCTCTTCGTTGAGTTTATTGAGCATTTGGCCAAATACAAATCCCCAGGTAAATGTTTGTTGATTTTCGATGGCGCGTCATCCCATCTGGACTACAAAATTGTCGATGCTGCAGAAAAGCATGACATAGTTCTGTACTGTTTGCCATCAAACACAACCCACGAGCTCCAACCGCTTGATAAATCAGTAAATAAGTCATTTGAGCATTTTTGGGATGAAGAAGtactactttttatttaccaaaatcCACAGAAGAACCTCACCAAAGcacgttttaataaaatctttactaGAGTATGGGCAAAATGCATGACCCACAGCAATATAATAAACGGATTTAGGGCAACTGGTTTGTACCCTTGGGATCCGAGTTCAATCCCAGAAGAAGCCTTTGCGCCATCCATGCTCACTGAATTAACTGCTACGCAACTCACTACTAAAGACAATTCTGTAACGGCACCAAATTTTCCTGAATCTGTTAATCTTTTCAATCGTACCTTTGACTCTGATATTACTTTTTGTGGTGAAGATTACTCTACAGCTCAGAATTCAGGAGCAACAATAAAGcaactccaaaacaaattagTTGACTATAGCTCTTCCATAGAATCTTTACACTCGGTTGATATACATGTCCCTATTCGATCCAGTACTCCTGGCCCTGGTCCTTCGGGATTACAAGTTCAACATGTTCAATGTCTACCTATACTCTTATCTTCGCCATCAGATATATCTGATATTGAATACAATCTCCCAATGATGCAAAATTATCCAACAAAACGTGTTAGAATATATACGTCTTCTTCCGATTCCGATGAAGAAAATAATAACGCTATTCAGTCATATTTTACGCCGAAAAATAATCAGAATGATTCATTTGATGATGACATGCCACTATCAGAACtccaaaataatacaaaacaagaGTCATTATTATATTCAAGTTTTAAAGAATTTCTTCCAACTCCCAATCATgcacaaagtaaaaaaaaaccaaggCGAAAAGCATTAAATTACGTTGGACAGAAAATAACTAAAGATTTATTCAAAGCTAAGTCAAGCAATAGTGCAAAAAACTCTGCCAAACAGatcaaaaattacaaaaatactacTAAAGAAGTAAAGCCAAGTCAAAAAGTAAAGGCAAGAAAAAAGTCATCTCAAatAATTTTCTTTCCACATTTTGCCGCCACTGATCCTTCGCCCAGCTTGTCTTACAATTTTAGgaatGTCAAAGATGAGCTATACGAGCAACCTGTCAACTTCATGGGCCCGAAGAAGTCGCTGCATGCCAAGGACGAGTCAACAGGTTCGGAACACACGGAATCTAATACGGACTCTTGGACTCAATTCGACTTCTCGAAGTTcgattcttatttaaataactacaatCAAGAGTCAGAGAATCCAGACCACAACCGGATCAAAAGACGAGCCAGAACAGTCCGAAAATTTAACACCATGCTTGGCCCTCAACTGCGGGAGCGACCCCACCACTACACCTATCCAGAGCCCGTTAAAGATAGAGTTATGGAGTTCACCACCACGAGCAGACGACCTGGAATCCTTCCAGATCAGATGAATCCAGGAGTCATTTTCAGAGTCCGGATGTCGGATGCTATTTTGCGCATCAAGCAGCGTATGTACGAAGATCCTGAAAGACATATTGAAGCTGacattatttacacaaatttaattaaaaaagttgtaatGGACGAAATCACAAAATTCCACAATCTTTTGCTTATGTACAAAACGGATAAAAGTATAAAGGAGCATCTGGGAGAATGTGGTGGAAGAATCTACAAGTTCATCAGTTACATGACTATAAAGGTTCATATCTACTGTCTCTTTGATGCACTCTGGATCGATGGAAACCCTTATGTGATAGGGGATGAATACTCCGTGACGCCAGTTGAGATACCCCCCATGTTGCAGTGTGATGCAGCTGAATGTAATTCTATAGTATTCGTTGATTCCATAACTGAACCCAAAGATGTTGAAgaataa
- Protein Sequence
- MKRSQKRKRGSGWSQTDLQNALDDIKNNRISERAAALKYNIPRRTLKNHIKSGSVVKRLGRKAVFTDTQEKELVERIKKFSNIGMPLTPKIIRKQAYLFCKRNNIKNPFSDKKSTAGKKWLYNFLVLNKDISQRKAQFMNPARAQKLNKHIVDKHFKAIREIYDELNIDQHPERLYNVDEKGCRLTIHRQKKVLAGRGSRRVHLIAQEHAENVTIAPCVNATGNAIPPMIVFKGKRLREEFLENLPAGSLVKMTPKGSMTTELFVEFIEHLAKYKSPGKCLLIFDGASSHLDYKIVDAAEKHDIVLYCLPSNTTHELQPLDKSVNKSFEHFWDEEVLLFIYQNPQKNLTKARFNKIFTRVWAKCMTHSNIINGFRATGLYPWDPSSIPEEAFAPSMLTELTATQLTTKDNSVTAPNFPESVNLFNRTFDSDITFCGEDYSTAQNSGATIKQLQNKLVDYSSSIESLHSVDIHVPIRSSTPGPGPSGLQVQHVQCLPILLSSPSDISDIEYNLPMMQNYPTKRVRIYTSSSDSDEENNNAIQSYFTPKNNQNDSFDDDMPLSELQNNTKQESLLYSSFKEFLPTPNHAQSKKKPRRKALNYVGQKITKDLFKAKSSNSAKNSAKQIKNYKNTTKEVKPSQKVKARKKSSQIIFFPHFAATDPSPSLSYNFRNVKDELYEQPVNFMGPKKSLHAKDESTGSEHTESNTDSWTQFDFSKFDSYLNNYNQESENPDHNRIKRRARTVRKFNTMLGPQLRERPHHYTYPEPVKDRVMEFTTTSRRPGILPDQMNPGVIFRVRMSDAILRIKQRMYEDPERHIEADIIYTNLIKKVVMDEITKFHNLLLMYKTDKSIKEHLGECGGRIYKFISYMTIKVHIYCLFDALWIDGNPYVIGDEYSVTPVEIPPMLQCDAAECNSIVFVDSITEPKDVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -