Apln012780.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Arctia plantaginis
Gene Symbol
-
Assembly
None
Location
CADEBC010000543.1:44158-50998[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.9e-11 3.7e-08 33.0 0.0 1 40 316 355 316 358 0.92

Sequence Information

Coding Sequence
atgtATCTCGAAAAATCTGGACGCATTGTCcgaaaatttaagaataatacgCTCGAAACTGACTGggttaaacaatttttgaaacGCCATCCTACCCTCTCAGTGCGTTTTGCAACAAATATCAAGATCAGGGCAGCGTTATCAAAAGAGATTTTACAAGAGTACATTGAAAATTTAACACCAAAAATTAGAGACATCCCTCctacacatatatttaactatGATGAAACAAACTTAGCAGACGATCCCGGCCAGAAACGAGTAATTGTTCGAAGGGGATGCAAATATCCTGAAAAAATCTGCAACACGTCAAAATCAAGTAATTCGATCATGTTTTGTGGTAGCGCTTCAGGTGAGCTGATGCCCCCGTACGTAGTGTACAAATCGCAGAAGTTATGGGATACATGGACCGAGAATGTTCCCAAAGGATGCCATTACAGCAATTCTCCTTCAGAGCCCAACAGCCCAGAGGAGAGTAATCATCCACCTCGACCAGAAACGAGATTCAAAGATGTGAGACGTGAGAAAGAGTCATTTgtggtagtaaaatatgatGAGAAACTGTACCCTGGTCTCATTATCGACTTCGATGAGAAAGGAGCAACTGTCGATGCAATGACTAAGTCCTTAAAATCCTGGAAATGGCCACAGAAAAAAGACATTAACCTCTATGAGTGGGAAAATGTCCTTGGGAGCATTGACCCTCCAAAAGTTATCTCTCGGCGAGGTTTTTTGGCAAGTTATGACTCGTCTGACTCCAGTAGTAGCGATTCAGATGACGCAGAACCAAAGAAAAAATCTCGTAACAGTAACGTTTCGTCTAGTTCAGATGATTCAGATAAGGCGGAACCAAAGAAAAAATCTCTTAAAACTAACGCAACTATCATCAAAGgatttaaaATGGTGCGAaattacgttaaaaaaaaggagacTGGACCCAAATATTCAGAGGACAAATTAAACCGCGCTCTTGAAGAAATACAGGCCAGTAGATTAACAATTCATAGAGCGTCAACTTTGTATGGAATTCCGTTTTTAACTCTATATAGTAGAATTAAAGGCACGCGAGGAGCTATTAAAAAAGCAAAGGGAAGGAGAACTGCTCTCGCTGAAAGTATTGAGAATGTGTTAGCGACTTCTATCAAAACGCTAGCAAAGTGGGGTTTTGGTCTTAGCAGGAAAGAAATTTTCGAATTGGTGGGTCATTTTGTGACAAAAAACGATCTTCAAACACCTTTCAAAAATGGGGTTCCGGGGGAGGACTGGtttcttagttttaaaaagaGACACAACTTGTCCATTCGGAAACCGGAGCCGTTAGAATTTGCTAGAAAGAAATCTGCTACAGACCCATTTAACATTTACGGATATTTCAATCTTCTAAAAAAGGTTTTGGTGGAACTGGACATAGAGAACAAGCCTGGTCGTATCTGGAATTTGGATGAAAGCAGCCTTAGTATCGATCCATCCAAATCAAGAGTCGTAGGAGAGAAAGGTCAAAGCTCATCACGAGTTACAAGCACCTCGGGTAAAGAAAACACTACTTTTGTTTTAGCCTGTAATGCTATGGGTCAACGAGTGCCTCCTTTAATAATATTCAAGGGAAAAAATATGTGGGATCAATGGAAGGCACCACCGGATAAAGAATTTTCTGGAACAGCTTACGCGGCGACACCTAATGGCTGGATGGAGACTgaagttttcaaaaattattttaaaaaatccctGGTACCGGCTTTGGGTGATGAAAGACCTGCCTTGGTTATATACGATGGCCACTCCACTCATGTTTTGCTTGGCTTGGTAAAATATGCTTTGGACCAAagaataactattttaaaactccCTGCCCACACTAGTGATATTCTACAACCATTAGATGTCTCGGTTTTCAAGTCTTACAAACAAAAATGGGACCAAACTATAGCAACTTGGCAGCGACAACATATTGGTAAAAAGCTACCCAAATCTCTATTTTCTCAATTTCTAGGAGAAACTTGGACCAAAGTCAGCGACGACGTCATCAAGAACGGATTTAAGAAGGCAGGCATTTTCCCGTTTGATGTGGATGTTGTTCCAAAGGAGAATTTCTCCAAAGAAGCTTTAGAGCGTTGGGGGAGATACCAACAACAAATTGAAAGGGGTGTTCAAGATATAGAGCACGTTGAAAATGCAAGGTATGGATCGCCATCGCTTTTAACGTTGCCGTTTTTTGAGAATGTATATGAGACTTCCAGTTTACAGACACTGAATGTCAACTCTGTAGATCTACAAAGCTCCATAATTGATACTCCACGTTCTCAAGAAAACCCAGTTCATAATCCTAAATTCTCTCAAGCCGCATCTATGGAGCAATTAATTTTGTCAGTTATTCACCAAAAACAGATGCCAAATAAACAAAAGAGACGGAAAGTAGCCTCGGGTGCTGAAGTTATTACATCTGCTGAAATTGTTAAAGTATTGAAGGACAAAGAACAAATTCAATCAGCTAAGCTAATAAAAACTACACccaaaacgaaaataaaaaggaaacagGGAAAGAAAACTGAGAATTCAGATAGTGACATAACGGACATAGAATCTGTACAGGTTGGTAGTGAcgtaaacaaagtaaaaaaagttagtaaaagGAAAGAAAGGAGGAATTTAAACCGAAAGCAAAAGTCAGACGATACAGAGAGTGAGGAAAGTTCTGAAGGTAATGTGTCATATGCAGAATCAGATGCTAGTGAAGGGATGGAAGACGAAGACGAACAACGAGAAGACGATGAACAATATCAttctgataaagaaaataacgAAAGTAGAAAAACAACTGTGATGAAAAATAGAATTGGAAGAGTGGGGATGAATAAAGGAAGGGAATTAGCAAAAGAACAGATAAGAACTGAACGGGAAGGATCACACGAAAAAGCAAATGAAGAGcgaaatatagataatatagaaGGACCTGAGAGAACCCCAACAGAGGAAGAAACAGAAGACAAAATTCAAGAAATCCTTGTGAACAATTGGGTTTTAGTAAAATATGCACTGAAAAAAGGACCTAAGTACTACGTAGGTGTTGTACAAAAAAAGGTGGGGCTTCGTTGGGAGGTTAAATTTGTAAGACGCAAGGGATaTAATTCACGTAAAACTAACTCACAATTTGGTGATAAAGTCAATTCCAAAAAAGATGAGCCTTTGGGAGATGAATGA
Protein Sequence
MYLEKSGRIVRKFKNNTLETDWVKQFLKRHPTLSVRFATNIKIRAALSKEILQEYIENLTPKIRDIPPTHIFNYDETNLADDPGQKRVIVRRGCKYPEKICNTSKSSNSIMFCGSASGELMPPYVVYKSQKLWDTWTENVPKGCHYSNSPSEPNSPEESNHPPRPETRFKDVRREKESFVVVKYDEKLYPGLIIDFDEKGATVDAMTKSLKSWKWPQKKDINLYEWENVLGSIDPPKVISRRGFLASYDSSDSSSSDSDDAEPKKKSRNSNVSSSSDDSDKAEPKKKSLKTNATIIKGFKMVRNYVKKKETGPKYSEDKLNRALEEIQASRLTIHRASTLYGIPFLTLYSRIKGTRGAIKKAKGRRTALAESIENVLATSIKTLAKWGFGLSRKEIFELVGHFVTKNDLQTPFKNGVPGEDWFLSFKKRHNLSIRKPEPLEFARKKSATDPFNIYGYFNLLKKVLVELDIENKPGRIWNLDESSLSIDPSKSRVVGEKGQSSSRVTSTSGKENTTFVLACNAMGQRVPPLIIFKGKNMWDQWKAPPDKEFSGTAYAATPNGWMETEVFKNYFKKSLVPALGDERPALVIYDGHSTHVLLGLVKYALDQRITILKLPAHTSDILQPLDVSVFKSYKQKWDQTIATWQRQHIGKKLPKSLFSQFLGETWTKVSDDVIKNGFKKAGIFPFDVDVVPKENFSKEALERWGRYQQQIERGVQDIEHVENARYGSPSLLTLPFFENVYETSSLQTLNVNSVDLQSSIIDTPRSQENPVHNPKFSQAASMEQLILSVIHQKQMPNKQKRRKVASGAEVITSAEIVKVLKDKEQIQSAKLIKTTPKTKIKRKQGKKTENSDSDITDIESVQVGSDVNKVKKVSKRKERRNLNRKQKSDDTESEESSEGNVSYAESDASEGMEDEDEQREDDEQYHSDKENNESRKTTVMKNRIGRVGMNKGRELAKEQIRTEREGSHEKANEERNIDNIEGPERTPTEEETEDKIQEILVNNWVLVKYALKKGPKYYVGVVQKKVGLRWEVKFVRRKGYNSRKTNSQFGDKVNSKKDEPLGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-