Apln000417.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000059.1:695407-697797[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-14 1.7e-11 43.7 0.1 1 44 16 59 16 60 0.93 2 2 1.8 1.2e+03 -0.6 0.0 31 43 430 442 428 443 0.85
Sequence Information
- Coding Sequence
- ATGAAACCATCTCATTCCACACGTAAAAGAAGAGGGGAGTCATGGTCTGAAGACACGATGAAAGCTGCCATTAAAGCTGTGCAAAGAGGTCATTTGACTCAGCGATCAGCAGCAACAAAGTATAATATTCCGCGAAGAACTTTAAGAGATCATTTAAAAACAGGTCAAGAAATCAAACGTTTGGGAAGAAAGCCTATTTTAACGAATGAACAAGAAAAAGATTTAGCTTCGCGGATTAAAAGATTTGCAAGTATTGGGATTCCACTAACGCCTAAATTCATTAGAAAACAAGCTTTCTTATTTTGCGAGAGATatgatatcaaaaataatttcaataaatccAAAAGGATTGCTGGTGTAGATTGGTTGagattctttttaaatagaaatccATCCATTAGTAAACGAAAACCGCAAATAATGAACCCAGCTCGTGCACAAAAGTTGAATAAACCTATTGTTCAACAACATTTTCAGAGTATCCGCAAATTATATGATGAGTTAGATATACTGCGACATCCAGAAAGGTTATATAATATGGACGAAAAAGGATGTCGAATAACTGTGCATAAACAGCATACAGTTTTGGCTGAAAAAGGGAGCAAAAGGGTTCATCTCATTGCCCCGGAACATGCAGAGAATGTCACCATTGCGATGTGTGTGAATGCCATAGTTAACCCTGATAGGACATTGAAAAAAggcgatttcaataaaatattttcgcaAGTGTGGCCCAAATGTATGACACACACTAACATAGTGAACGGATTCAAAGCAACAGGCTTGTATCCTTATAACCCTGAAGCAATCCCAGAAGAAGCATTTGCTCCGTCAGTTTTATCTGAAATTCCATATCCTCAAAATCAAAACAAACCAATGCAGAATCCTAAATCTGATGCTAATGTTGACACTGACTCTGACGACAATCAGCGTAATCTTGATATAAACACATCAAACATACTGGACTTGACTCCTGATGAATTAAATGTTATCAACATTGACGACACTCTTACTGTGACGCCGCGTACTGAACAGTGTGAcaatcttcaaatttttttaccTCAACCAACAGCATTAAAGGCTCAAAACATTTCTCGTATTGTTGATTATAGCTCATCTACTGATATTTCTGAAAATGAATTGGAAAATCCTACGCTGCATGATTCATTCCATAACTTATGTGTTTCACCTTCCACAATTCCTGAAAATTTCTCTGTGTTACCTGAAGTGCCTGCAAACAAAGAAAGCTCTACGGGTAATGACATTGATATGGCAGTTCCAAGTTGTTCAGGTCTACAAAGACACATACGTCGAACATACAGCTCTGACTCGTCTGACATAGATAGTTTCATAATCAAGCCATCACAtgataagttaaaatattcagTTGAAGATGTCTATGGTTGTTCATCAGATgaagaaaatgaaattttatctaTCATTGATAAAGGAGTAACTACACCTAAAAAGCAAATAATCAATGTTGCGCAAGAAAACATAAATCAAAAAGCAAACCCTGATGATGATAAGTCTTGTTTTTCAGATGAAGAGAATGTCCCAttatcaaatttgaaaaaaccaagcaataaaacagaatttgaagactttttgccgactcCTAATTACGCTATAACTAAAACGAACCGTCCACGAAAGAAAGCTCTTAATTATAAGGGTCAACGTATTACTAAAGATCTCTTTGACAAAAAAGAtgaagataaaaagaaaacaaagaataGCAATACCAAAGAACATGAGAAAAACAAGAAAgataagattaaattaaaaaataaatcaataaaaacaaaagatagGTTGCCAAAAAAAGTTAAGTACATTGCTAAtgaacaagaaaatataaagagGATTAATGAAAAAAAGGACGATACAGAAGAACATTGGTACTGCTATGCATGTcatgaaaacataaaattgGACATGAGACAATGTAAATTTTGCAAGAAGTGGTACCATGAGGAGTGTGTTGGCCTCACGAAACATGACGAAGACTTCATGTGTTCAAATtgcgaataa
- Protein Sequence
- MKPSHSTRKRRGESWSEDTMKAAIKAVQRGHLTQRSAATKYNIPRRTLRDHLKTGQEIKRLGRKPILTNEQEKDLASRIKRFASIGIPLTPKFIRKQAFLFCERYDIKNNFNKSKRIAGVDWLRFFLNRNPSISKRKPQIMNPARAQKLNKPIVQQHFQSIRKLYDELDILRHPERLYNMDEKGCRITVHKQHTVLAEKGSKRVHLIAPEHAENVTIAMCVNAIVNPDRTLKKGDFNKIFSQVWPKCMTHTNIVNGFKATGLYPYNPEAIPEEAFAPSVLSEIPYPQNQNKPMQNPKSDANVDTDSDDNQRNLDINTSNILDLTPDELNVINIDDTLTVTPRTEQCDNLQIFLPQPTALKAQNISRIVDYSSSTDISENELENPTLHDSFHNLCVSPSTIPENFSVLPEVPANKESSTGNDIDMAVPSCSGLQRHIRRTYSSDSSDIDSFIIKPSHDKLKYSVEDVYGCSSDEENEILSIIDKGVTTPKKQIINVAQENINQKANPDDDKSCFSDEENVPLSNLKKPSNKTEFEDFLPTPNYAITKTNRPRKKALNYKGQRITKDLFDKKDEDKKKTKNSNTKEHEKNKKDKIKLKNKSIKTKDRLPKKVKYIANEQENIKRINEKKDDTEEHWYCYACHENIKLDMRQCKFCKKWYHEECVGLTKHDEDFMCSNCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785930;
- 90% Identity
- iTF_00157134;
- 80% Identity
- -