Apln017168.1
Basic Information
- Insect
- Arctia plantaginis
- Gene Symbol
- -
- Assembly
- None
- Location
- CADEBC010000733.1:801039-819381[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-12 2.5e-09 36.7 0.0 4 39 364 400 361 404 0.89 2 4 5.8e-11 3.7e-08 33.0 0.3 2 39 416 453 415 457 0.92 3 4 2.2e-15 1.4e-12 47.2 0.1 2 45 471 515 470 515 0.96 4 4 5.5e-17 3.5e-14 52.3 0.0 1 42 522 564 522 566 0.95
Sequence Information
- Coding Sequence
- ATGTGCACCTTCGATAGCACCTCTGTAACGTGTCGGGGACTAGTTTTTAGTACGTTCGTGTACGGCTCGAAGGGGAGCGAGCCTACAGAGCAACGCGCGGCCGGTTCCCGGCAAAAaggcttttgtttttatttctttggcgCGGAAAAAAATCAGCACGCGCCCGCCCTGCACCTCCTAAACATGCGCCACGCAGCGACGCAGACTCCGCCGGGTGTGTGCCGAATTCACTTTCATTTGCGACATCTCATCGTTTCCCGAAGGTCACCGTGCAGTCGCGGGTGTCGTGACAAGTTCGCGGTGCATGTGTGGCGCGGGCGAGTGGTTGCGGCGGCCACCGCTGACCGACTAGGTGAGTTTCAGAGTGAATTTCGCGCCCGCGTCTTTGACGATTCCGTTTCCCTCGTGTTTATCGGCACCCGTTTTGCACCGTCCTTCGGCGAATGCCGGGAAGACGTTCAACGTGAATGTGTTTTCGTATCTCGCGGTGTGTCGGGGTCGCGCAGACGTGCATTGCGCCCGTCGGCTCCTCGAATAGAAAGATGTGAACGACGAGAGAGGGAGATGCCCGGCCACGGACTGTTGCTGGTGAAATGCGAGCCACCGTCTGACGAAGAAGATAGTAATTCACAGTTCGCGCGCGATTATTTATCTAGTCAGtttACGCCGCAAGTTCATCCATTAAAATTAGATTCGCCGCGAAAGAGTAATGATAGTGTTTCAAGAGATTTACTTCAAGACTTGCAgggcagtggtcTTGAAGAGCTGGCACCGCTGGCGCCGGCGGGACCTGCAGCCACGCCGGTATGTGTCAAACAGGAACGAGCCTCACCCCCAGCTACGATGCTGGAGACTCTCGAATCGGCACCGCATTATGCCAAGAGCACGTCGTTGTTGGACCACCACAGGATTGCAATGAACGTTGGAGAAGTGCCGGACTCCAGAGACTTCGTGCCACTCTTAACTGTTAAAGATGAACCCTCATCCGAAGGAGAACAACTTCAGCTCAGTGGCGAAGACACGAGTGACTCTTGCAGCAGACAAATGTCGCCAGCTCCTCGGAACAGCCCCAAGAGTTGGACGCAACAAGATATGGAAAGAGCGCTAGAGGCACTTCGTAAACACCAGATGAGTCTTACTAAGGCATCAGCAACTTATGGTATCCCTTCAACAACATTGTGGCAACGGGCGCACCGTCTCGGTATTGACACCCCGAAGAAAGAGGGAGCCGCCAAGTCCTGGAGTGAGGCCGATCTTCGCGGGGCTCTTCACGCGTTGAGGGCGGGTGCTATATCTGCCAACAAAGCCAGCAAGGCTTATGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTGTCGGCGCCGTTCAACGCGGCGCCCACGTCGTGGCGGCGCGCCGACCTGCAGcgcgcgctcgccgccatccGCGCCGGGGACTGCTCCGTGCAGCGCGCCGCGCACGCCTACGGCATCCCCACCGGAACGCTGTACGGTCGATGTAAGCGCGAAGGTATAGAGTTATCCCGGTCCAACCCTACGCCGTGGTCGGAGGATGCTATGGGAGAGGCTCTCGAAGCAGTTagGATAGGACAGATGTCGATAAACCAGGCGGCGATACACTTCAACTTGCCGTATTCGTCGCTGTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGTGTCCTTCAACACCAGCAGGAACAGCAAgacgtaaaaaaaatagaaatggaCATTCCACAACACGAGGCTCACCAATACTACCACCAACTGCCTCCCCCACTTGACCAAGACCCACAAACATATGGCCATGTGACTGAATATCCCCACAGCACTTATATTCATGACCAATACGGCCAATATTACCAATCTTTTAGTGGTATAGCGACCAGCTGA
- Protein Sequence
- MCTFDSTSVTCRGLVFSTFVYGSKGSEPTEQRAAGSRQKGFCFYFFGAEKNQHAPALHLLNMRHAATQTPPGVCRIHFHLRHLIVSRRSPCSRGCRDKFAVHVWRGRVVAAATADRLGEFQSEFRARVFDDSVSLVFIGTRFAPSFGECREDVQRECVFVSRGVSGSRRRALRPSAPRIERCERREREMPGHGLLLVKCEPPSDEEDSNSQFARDYLSSQFTPQVHPLKLDSPRKSNDSVSRDLLQDLQGSGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHYAKSTSLLDHHRIAMNVGEVPDSRDFVPLLTVKDEPSSEGEQLQLSGEDTSDSCSRQMSPAPRNSPKSWTQQDMERALEALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQRALAAIRAGDCSVQRAAHAYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVLQHQQEQQDVKKIEMDIPQHEAHQYYHQLPPPLDQDPQTYGHVTEYPHSTYIHDQYGQYYQSFSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -