Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387371.1:761275-787727[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0039 0.29 12.5 1.3 1 20 276 295 276 298 0.93

2 8 0.00042 0.031 15.5 4.1 1 23 305 327 305 327 0.97

3 8 0.087 6.4 8.2 1.6 1 23 331 353 331 353 0.98

4 8 0.025 1.9 9.9 2.4 1 21 358 378 358 381 0.94

5 8 0.14 10 7.6 0.1 3 23 388 409 387 409 0.91

6 8 0.015 1.1 10.6 0.1 2 21 418 437 417 438 0.93

7 8 0.0026 0.19 13.0 2.8 2 23 477 499 476 499 0.92

8 8 6 4.3e+02 2.5 0.0 1 9 539 547 539 553 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0039	0.29	12.5	1.3	1	20	276	295	276	298	0.93
2	8	0.00042	0.031	15.5	4.1	1	23	305	327	305	327	0.97
3	8	0.087	6.4	8.2	1.6	1	23	331	353	331	353	0.98
4	8	0.025	1.9	9.9	2.4	1	21	358	378	358	381	0.94
5	8	0.14	10	7.6	0.1	3	23	388	409	387	409	0.91
6	8	0.015	1.1	10.6	0.1	2	21	418	437	417	438	0.93
7	8	0.0026	0.19	13.0	2.8	2	23	477	499	476	499	0.92
8	8	6	4.3e+02	2.5	0.0	1	9	539	547	539	553	0.82

Sequence Information

Coding Sequence: ATGACGGCTAGATCGAAGGAGCTGGTCGCTTGTCGCGCGTGCCTCGCGGTGGACGGGCGGCTGTACGCCATAAGCGGCAGCGGGTTGGAAGACACGCTCGCGGCACTCACCGGGATCTCAATGTCAGTGTCCGAAGGTTTGCCGCGTCACCTGTGCGCGTTCTGCGTCGCGAAGCTGTCAAAGTGCGTCGCCTTTCGTGACAGCTGTCAGCGGAGCACAAAGCTGCTGCAGACTTTACTAGAAAAGGGCCCGATAAAAAATAATATTAAGGCTATCGACCGATATTCACACAAACTGACTAACAATCTCACTTGTACCAAAGTCTTCCAATTCGCAATCAAGCCTTTACTCATAGCAGTGCCTTTAATTAAACTTGAAAAGAATGAAAATCTACACGTAGAAATGGATTATATAGAAAACGAACATGTAGACATTGAAGATTCTGTCAAAAACGATACAAATGATGTAAACAAACATGCTTTTGAATTGCCAATTGAAAAACGGAAGAAACCTGAAATTAAGACAGTTAAAACAGAAAATCACGATAAACAGCTAAAAATAAATGACCAAATAGAAATATCTTTAGTTAAAAAAGTTAAAACCGACAGTGATAATGATACCAGTGATGATGACATGGACACATCAGAGATAAACTTGCTGAATAAAAATACTACAAAATTTGCCATAGCACCGAAATCATACGAAATTCCTCCGCCTATCGACATGAAGGCATTTGAGAAGAAGTATAATGTTGATTATAAATTTATGAACAAAGAGGAACAGATGAAAGAGATAGAAGATAAGAAAAAGAATAACGCGCTGAAGTATTGCTGTGACATGTGCGGACGCGGGTACACGCGCGAATATTCATTTGTAAATCACTTGTGGATACATGACCCGAGGGTGGGTCCGTTCGAGTGCGACGTGTGCCGGCAGCGGTTCCGGCGCTCGCACCTTCTGCTGCGGCACCGCTACAGCCACCGCGACCGGTACACCTGCCGGGAGTGCGGCCTGGTCAACCGGGACAGCACCAGCGTGAAATCCCACCACAAAGTGCACGAGGGCAGTTCCTACGCTTGCCCTTACTGCCAGGAAGAGTATGTCCGGAAGAACTCTTACTACAACCACGTGCGGTGTACTCACCCTGAACACAGTGAGGCGTGCGAGCAGTGCGGCGAGACGTTCCTGTCTGCGTCTGCCGTGAGGCAGCACAAGTCGCTGGCGCATCGCCCGAACGAAGCAGCCATCTTGAAATGTAAAGGTTGCGATGTCACGTTTTTGAGCCCCGCAGCGCTGCAAAGGCACGAGAAATTGAGCGCGGGCGTGCCGCATGCGGCGCTGTGGCCTTGTGCCGCATGCGGCGAGATTAGTGGCAGCGAGGCCGCGCTTAAGACGCATGCGGCAGAGAGACACTCGCCTGAGCAGCTCCACTGTGACAAGTGCAACAAAACGTTTTCGAACGCGGCGTCCTTTTCACTCCACGAGACGCGGAAGCATCGCGGCGAACGCTCAGCCGCCGCGCCCTTCCGCCGCATAGTCAGCGGCCCGCGCCGCCGCACGCCCGGTACCGGGCGCTCCGGGCCCTGCACGCCCAGTACCCGGCCCCGCGACCTGTTCGTCTGCGAGATATGCGGACTTATACTTAAAGGGCAGACGGAGTCGCGGGCAACAGCTCGTAATTTTATAAATGCGAAAGTTTGTATTGTATTCGCCTGGTACCGGGCCCCGCACGCCCGGTACCAGGCCCAGGCAGCTCGACTGCGAGATATGCGGCCAGAAAATGCAGGTGCCAACCATTTAATTTCTGATTATTTTAACAAGAAAAATGTGCTTTGA
Protein Sequence: MTARSKELVACRACLAVDGRLYAISGSGLEDTLAALTGISMSVSEGLPRHLCAFCVAKLSKCVAFRDSCQRSTKLLQTLLEKGPIKNNIKAIDRYSHKLTNNLTCTKVFQFAIKPLLIAVPLIKLEKNENLHVEMDYIENEHVDIEDSVKNDTNDVNKHAFELPIEKRKKPEIKTVKTENHDKQLKINDQIEISLVKKVKTDSDNDTSDDDMDTSEINLLNKNTTKFAIAPKSYEIPPPIDMKAFEKKYNVDYKFMNKEEQMKEIEDKKKNNALKYCCDMCGRGYTREYSFVNHLWIHDPRVGPFECDVCRQRFRRSHLLLRHRYSHRDRYTCRECGLVNRDSTSVKSHHKVHEGSSYACPYCQEEYVRKNSYYNHVRCTHPEHSEACEQCGETFLSASAVRQHKSLAHRPNEAAILKCKGCDVTFLSPAALQRHEKLSAGVPHAALWPCAACGEISGSEAALKTHAAERHSPEQLHCDKCNKTFSNAASFSLHETRKHRGERSAAAPFRRIVSGPRRRTPGTGRSGPCTPSTRPRDLFVCEICGLILKGQTESRATARNFINAKVCIVFAWYRAPHARYQAQAARLRDMRPENAGANHLISDYFNKKNVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -