Basic Information

Insect: Archips xylosteana
Gene Symbol: ush
Assembly: GCA_947563465.1
Location: OX387345.1:3683658-3688699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0096 0.7 11.2 0.2 1 20 123 142 123 144 0.94

2 9 0.00011 0.0083 17.3 0.9 1 23 182 204 182 204 0.98

3 9 0.054 4 8.9 0.7 2 20 234 252 234 254 0.92

4 9 0.004 0.29 12.4 2.6 2 21 495 514 494 515 0.95

5 9 0.0065 0.47 11.8 0.3 2 20 545 563 544 565 0.91

6 9 1.6 1.2e+02 4.3 0.0 2 23 593 614 592 614 0.94

7 9 0.0057 0.41 12.0 0.9 1 23 620 642 620 642 0.98

8 9 0.38 28 6.2 1.0 1 23 679 702 679 702 0.96

9 9 0.24 17 6.8 0.7 2 20 734 752 734 754 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0096	0.7	11.2	0.2	1	20	123	142	123	144	0.94
2	9	0.00011	0.0083	17.3	0.9	1	23	182	204	182	204	0.98
3	9	0.054	4	8.9	0.7	2	20	234	252	234	254	0.92
4	9	0.004	0.29	12.4	2.6	2	21	495	514	494	515	0.95
5	9	0.0065	0.47	11.8	0.3	2	20	545	563	544	565	0.91
6	9	1.6	1.2e+02	4.3	0.0	2	23	593	614	592	614	0.94
7	9	0.0057	0.41	12.0	0.9	1	23	620	642	620	642	0.98
8	9	0.38	28	6.2	1.0	1	23	679	702	679	702	0.96
9	9	0.24	17	6.8	0.7	2	20	734	752	734	754	0.92

Sequence Information

Coding Sequence: ATGCTGCCAAATCTCCAAATATTTATAAATGAAGCTGTCTGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCAGGAGAACCTCGCACGCCGAGCTCTGGAGGCGAGCGGCCCGCGTCGAGCGGCGGCGCGTCGCCCGCGTCCGCTTCCGCCGGCTCCCCGGCAGCCTCCCCGCCACGCCTGCGCCTCAACACCTCGCTCGCCACCGACCCTGCGCTCGCGCCTTCCGCCACCGCCCTCAAGCGTGAACTCCCTTCACCCTCACCCCCGCCGCCGCCGCCGACGACGCAAGCCCAAGCTCGGGACTACCTGGCGCTGACAGCTGCGTTCCCGACGCTCTTCCCTGTCGCCCCTACAGGCTACATGTGCACGCCTTGCGGCATCCGCTACTCTTCTTTGAGTACTCTTCAAGCACACCAGGAACATTATTGCACTAGCAGGCGACCGAAGCCATCGGAATCGGTGGAACCGGGCGCTGATGCTGCCGCTGACGAATCTAGTAGTGATGCGAAGACGCCGCGTCGAGTAGGAAAACAATATGCTTGTACCTACTGTTCCTACAGCGCTGACAAGAAAGTCAGTCTCAACAGACACATGCGTATGCATTCTTCATCTCCGGTCAGCAGCGGAACGCCAGCTCCAGCGCCAACCTCTAATGGAGACACAACGGAGAGCCAGCCGTCACCTGATCGCTACTGCACCGATTGCGATATCAGATTTAGCTCGATACAAACGTATCGAGCTCATAAAACGCATTACTGCAGCACGAGGCAAGTTGTGAAGCCAGCCCTGCCTTCGGCAAGAGGAAGCTCTGTGACATCGGGCTCCGCGCCTCCATCGCCAGGAGCCACTCCGCCTGCTCAAAACCAATACGCATTAGCCTTGCCGACTAATCCCATCCTCATCTTGCCGTATTCTCTGTTGCGAGGCGCGAGCACTCTACCAGGTACGACTTTACCGGACCCTGACACGGCATGTTTCTTACTTCCAAATGGAACATTCCAACCTCTGACGCGAGCTTTACCAAATATGAATTCAGACGTAAAGGACGCAGAAGTTTTAAAATCGGCTAATCGGCCACGCGAACCTTTAAAAGATGGTGGTACACCACTTGATCTGAGCGTGAGGCGTACTCCTGAATCGGTAGGGACAGATGAGCATGAGAAAGAGAACCGATTGAGATCTACGACACCGGAGCAAATTGTGTGCGCACCTTCGCTGCCGGGATCCCCGGGCACGCCGTCGCCTGCGCGGCGTTCTTCTTCCCCCAGCGGTGAGAGCTCGCCCAAACGTCGACGGCGAGACTCGCCGCGAGGCCCGACACCGAAACCCCCAAGTGTCCCATCTCCACCTGAAGGCAAGTTCACACCAGTGGTCGCCCCAGCCGTCTTACCACCCGCTTTAGCTATACGTTTAGCCTCAGAACTGCCTCTCGCGGGGGCATCTCCGCAAGTTCTAGTCAAGCAAGGTGTCTCAAAATGCAAAGAATGCAACATCGTGTTTTACAGACAGGAGAACTATCATATTCACAAGCGTCACTACTGTTCCTCGAGGGCCGCGGACGGCCGGGCTAGTCCAGCTCCTGCGCCGTCGGAGCCGGGACCGCCTCCACAGTACCGCCAGCTCTACTGCTTGGCTTGTGGGATTCACTTCAGCTCTCTGGATAATCTTACGACGCATCAGTCTTACTACTGCACGAAGCGCGAGACGCGTTCGCCGCGGACTGTTCCGGAGGCTCCTAGGCCTTCTTCGGGGTCTGAGGGCGGTTGGAAGTGTCCGTGCTGCGACGTGGTGTCGCCGACTGCGGCGGCGGCGCAGCGCCACATGGAGGCCCATGCCGGGGTCAAGGCTTTCCGCTGCACCATTTGCCAGTACCGCGGCAACACGCTGCGGGGCATGCGTACGCACATACGCATCCACTTCCCGAAGAAGCCGGCGGATTTGCAGGAAGAGAGCTACATAGCCTGCGTGCTTGAAAACGACAACCGTGAGACTGCCTCGCCCTCCCCAGCAGTGGGGGAGCGGGTTCACCGGTGCAGTTCCTGCGCGTACACCTCGACATACCGCGGTAACGTGGTCCGCCACGCTCGCCTGGTCCACGCTACAGACGACCCTGAACCAGAGGAAACATCGCCCATACCCGCAGCCGACATCAAAAAAGAACCAGAGGCTGAGCTAGAGGAAACCCCGAATTACTGCAAATCTTGCGACATATCCTTCAAATACGTTAACACTTATAAGGCGCACAAGCAGTTTTATTGCACGGCCAATAACCAAGATGCCGCGGCGAATAATAATGTGTCACCGGCGCTGCCAACTGCCAGAGTCAACGAAGTGCTATGA
Protein Sequence: MLPNLQIFINEAVCEDEEWGNESEAMPGEPRTPSSGGERPASSGGASPASASAGSPAASPPRLRLNTSLATDPALAPSATALKRELPSPSPPPPPPTTQAQARDYLALTAAFPTLFPVAPTGYMCTPCGIRYSSLSTLQAHQEHYCTSRRPKPSESVEPGADAAADESSSDAKTPRRVGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPAPTSNGDTTESQPSPDRYCTDCDIRFSSIQTYRAHKTHYCSTRQVVKPALPSARGSSVTSGSAPPSPGATPPAQNQYALALPTNPILILPYSLLRGASTLPGTTLPDPDTACFLLPNGTFQPLTRALPNMNSDVKDAEVLKSANRPREPLKDGGTPLDLSVRRTPESVGTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPARRSSSPSGESSPKRRRRDSPRGPTPKPPSVPSPPEGKFTPVVAPAVLPPALAIRLASELPLAGASPQVLVKQGVSKCKECNIVFYRQENYHIHKRHYCSSRAADGRASPAPAPSEPGPPPQYRQLYCLACGIHFSSLDNLTTHQSYYCTKRETRSPRTVPEAPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICQYRGNTLRGMRTHIRIHFPKKPADLQEESYIACVLENDNRETASPSPAVGERVHRCSSCAYTSTYRGNVVRHARLVHATDDPEPEETSPIPAADIKKEPEAELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVSPALPTARVNEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01073106;
80% Identity: -