Axyl024290.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- zfy1
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:5416323-5427982[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.25 18 6.8 1.7 1 23 256 279 256 279 0.96 2 9 1.2e-05 0.0009 20.3 0.3 1 23 286 308 286 308 0.99 3 9 2.3 1.7e+02 3.7 1.0 1 19 312 330 312 336 0.89 4 9 0.0046 0.33 12.3 3.5 1 23 368 391 368 391 0.96 5 9 0.00023 0.017 16.4 3.0 1 23 394 417 394 417 0.96 6 9 0.3 22 6.5 0.2 3 22 427 446 426 450 0.91 7 9 2e-05 0.0014 19.7 0.3 1 23 456 479 456 479 0.96 8 9 0.00022 0.016 16.4 0.8 3 23 519 539 518 539 0.99 9 9 1.8e-05 0.0013 19.8 0.5 1 23 545 568 545 568 0.98
Sequence Information
- Coding Sequence
- ATGTCCTCATTAGTTGTTTGTCAGGGTTGTCTGACTTCCGGGAGAAGATTAGTGCCAATTGGAAAACATGCCAAGCTGTACCAGTCGCTGTTATTGACATACATAAACAATATTGGTAAGCAAAGGAAGCTGTGCTGGGAATGCCACAAAATGTTGGAGAATATCTACTCATTTCGCTTAAAAATTACTGAAGCTCAGAAACTTTTACACAATAAGTGTTTGGAAAAAAACAACTCTTTATCTACCCTAACCTCTGCAACTAAAGTAAACGAATACAATTTGATTATAAATGAGGAAATTAAACATACAATACCAATTGAATATGACGTTAACATAAAACACGAAGATCCTGATGAAGTAAACCTAGTTTCAATTGAACCAAAAGACATCAAACCACATGTAACTTCTAAACTAAATCTTGTTGCACTGCAAGTAGAAATAGTCAAGAACGAAGATGACACACATTTTGATGACACAGGAATTATAGATGACATAGAACTGATGAATGATGTAGAATTTAAAGATGAAAAAGATATTAAAGTTGAATTGGATGAACCATTAGTTCCGCTTGATATACTTGAGAAGAAAAGCGAGATTATTGTTAAGAAAGTGAGGAAGAAGAGAGGGGCTTTGAAACAGAAATACAGGACTATTATTTTAGGAGACATTCCGGATAAACGGAAACTGTATGATAAGGAAAAATTAGACTATAAAGGCGTACAAGAATGGCTGGAGCAGAAGAAGGCATCGCGAAACCAGAAGCGGTTCCAGTGTGAGCGATGCTTCTCGGGGTTTGCGACCAAGAAGTTTTACGACCGCCATCTGGAGGTGCGGCATGCGAGGCGTCTAGGCAAGTACGTATGCGACGTGTGCGGCTTCAGGTTCGCGGAGAAGTCGAAGCTGGCGTACCACATCCGCAGCCACTTCGTGCAGTTCGCGTGCAAGCTGTGCGGCGCTCGCACCCACACGCGCGGCGAGATGTACGCGCACTTCACGCACGGCCCGCACGGCCGCCTGCGCGAGTGCCGGCTCTGCGGCATGCGCTTTGAATGTCCCAACCGGCGTGAGTTCTTCGACCACTACAGAGAATTGCACGAAAAACACGTCTGCGATCACTGTGGGAAGAGTTATTTGAAGAAAAAGACCTTGATTTCGCATATTGCCAAGCGTCATACGGTGTACAGATGCGATATATGCAAAGTGACATACTCTACGCGTGATTCGTACAAACGCCATAAGAAAGAGAAACACGAAGTGGACATGAGCGAGCAGAACTACTGCGTCGAGTGCAACATGCAGTTTAGGAACAGCGCCATCTACAACATACATATACGGTCGAGCGTGAAACATCGACCTACCCGCGCCTACCCGTGTCCAGAGTGCGGCAAAGTATACACAAAGAATATAAGCATGAGGAATCATTACAAGCTCGTGCATTTGAAGAAGAGCGACTACCACTGCGCCATTTGTGATACGTATTACTTGACGGGACACCGGCTTCGTTACCACCAAAAGTACTTTCACGAGAAGTTGCCTAAACCGAAGAATAAGCTGTGCAAGTACTGCGGGAAAGGTTTCAATAACAACAGAATCCTGGATAACCATATTCGTACGCACACGGGCGAGCGGCCGTTCACATGCGAATTTTGCTCGGCGGCGTTCACACAGAAGCAGTCGCTCACCGCGCATCTCCGCTCTGCGCATAAATAA
- Protein Sequence
- MSSLVVCQGCLTSGRRLVPIGKHAKLYQSLLLTYINNIGKQRKLCWECHKMLENIYSFRLKITEAQKLLHNKCLEKNNSLSTLTSATKVNEYNLIINEEIKHTIPIEYDVNIKHEDPDEVNLVSIEPKDIKPHVTSKLNLVALQVEIVKNEDDTHFDDTGIIDDIELMNDVEFKDEKDIKVELDEPLVPLDILEKKSEIIVKKVRKKRGALKQKYRTIILGDIPDKRKLYDKEKLDYKGVQEWLEQKKASRNQKRFQCERCFSGFATKKFYDRHLEVRHARRLGKYVCDVCGFRFAEKSKLAYHIRSHFVQFACKLCGARTHTRGEMYAHFTHGPHGRLRECRLCGMRFECPNRREFFDHYRELHEKHVCDHCGKSYLKKKTLISHIAKRHTVYRCDICKVTYSTRDSYKRHKKEKHEVDMSEQNYCVECNMQFRNSAIYNIHIRSSVKHRPTRAYPCPECGKVYTKNISMRNHYKLVHLKKSDYHCAICDTYYLTGHRLRYHQKYFHEKLPKPKNKLCKYCGKGFNNNRILDNHIRTHTGERPFTCEFCSAAFTQKQSLTAHLRSAHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155706;
- 90% Identity
- iTF_00155706;
- 80% Identity
- -