Axyl023959.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:353250-399144[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.014 1 10.7 5.3 1 23 256 278 256 279 0.95 2 22 1.3 96 4.5 2.3 1 23 286 308 286 308 0.96 3 22 0.12 8.5 7.8 3.3 1 23 312 334 312 334 0.96 4 22 0.0017 0.13 13.6 1.2 1 23 339 362 339 362 0.97 5 22 2.3 1.7e+02 3.8 0.2 2 23 368 390 367 390 0.77 6 22 1 73 4.9 0.1 3 19 466 482 464 484 0.93 7 22 0.0046 0.34 12.2 0.1 3 23 496 517 494 517 0.94 8 22 0.22 16 6.9 0.3 2 23 523 545 523 545 0.90 9 22 0.00032 0.023 15.9 2.2 1 23 568 590 568 590 0.98 10 22 2.3e-05 0.0017 19.5 2.6 1 23 596 618 596 618 0.96 11 22 3 2.2e+02 3.4 2.0 3 19 626 644 624 647 0.91 12 22 3 2.2e+02 3.4 2.0 3 19 666 684 664 687 0.91 13 22 3 2.2e+02 3.4 2.0 3 19 706 724 704 727 0.91 14 22 3 2.2e+02 3.4 2.0 3 19 746 764 744 767 0.91 15 22 3 2.2e+02 3.4 2.0 3 19 786 804 784 807 0.91 16 22 3 2.2e+02 3.4 2.0 3 19 826 844 824 847 0.91 17 22 3 2.2e+02 3.4 2.0 3 19 866 884 864 887 0.91 18 22 3 2.2e+02 3.4 2.0 3 19 906 924 904 927 0.91 19 22 3 2.2e+02 3.4 2.0 3 19 946 964 944 967 0.91 20 22 0.055 4 8.9 2.5 3 23 986 1008 984 1008 0.94 21 22 2.6e-06 0.00019 22.5 1.7 1 23 1014 1036 1014 1036 0.97 22 22 5.4e-05 0.0039 18.3 0.9 1 23 1042 1065 1042 1065 0.95
Sequence Information
- Coding Sequence
- ATGGAATTGCTAAAAGTTGAAGAAACGGAAGAGCTCCAAGCTTGTAGGATATGCCTCGCAACGGATACCGAACTGTATTCTATATTAGAACATCGTCTCGACAATGCATTTGTGGAGATTATGGGCACTATGCTGTCGGCGTGGGACGGGTTCCCGCAGCACGTGTGCGGCTGGTGCCGGCGGCTGCTGCGCCGGAGCGCGGAGTTCCGCGCGCGCGGCGCACGCGCACACGCCGCGCTGGCGCGCCGGGCGCATGCGCACGCGATAACGACCGAGTTCGTCCGCACCCTCGACCGCGCGGCGCTCCGGCTGACGCTCCCGCTGGCGACTGCGGAGGCTGCGCCGGCGCTGCGCTGCTGGCACGAGCTCAAGCGGGAGCCCGAGCCGCCGCCGGAGCCCCCCGCGTCCCCCGCGTCCCCCGCGCCGCTCAAACAGGAGGACTTGGCGGGACACTACTCAGACGGCGCGGACAGCGACCGCATGAGCCTGAAGTACGAGGACGACTCCGCCGACGACGTGGCGCTGAGCCAACTGCGGGCACAGCCGCCGCCCCCGCCCAAGCGGAAGAAGAAGGTGCTCAGGAAAACTAAGGTGAAGAAAGTGAAGCCGGAGAAGAAGGAGCGCCGCAAAACGGAGAAGATCCGCGACGAGGACTTCCCCGCGTTCGAGAAGGAGTACAACATCGACGTCGTCATCCTGAACCACGAACAGCAGATAGAAGACATGGCGGCCAGGAAGGGGCGAGACAACTACATGAACTCGCTCTTCAAGTGCGACCTCTGCTTTAAAGGGTTCTACACGGAGGCGACCCTCAAGAATCACCACGTCAAGCACCATGACGAGAGTGTGGGTCCCCACGAGTGTTCCCTGTGCCGCTGCCGTTTCCGCATCCCGGCCATACTGCGGCGGCATGCGGAGACGCATCGCCTCCGCTTCGTGTGCCAGCACTGCGGGTTCACCGCTAGAGACAGGTCACACGCGATGACGCATTCCAAGGAGCACAAAGGGCTGCGGTACGAGTGCCAGTACTGCGGCGACTCGTTCAAGAAGCGTTCCACATACGGCACGCACGTACGCATCCAGCATCCCAACCAGAACAAGTCGTGTGACGTGTGTGGAGAGACCTTCCTCGGGGCGCTCGGGCTAGCCCTACACAAGAAGAAGACGCACCGACAGGTACCGCTACAGTACTCCCCATCTATCACCGCGTGCGGGGAGACCTTCCTCGGGGCTCTAGACTCGCGCTGCACAATAAGACGCACTGACAGCCTCGCGCTGCGCAGTAAGACGCACCGACAGGTACCGCTACAGTACTCCCCATCTATCGCCGCGTGCGGGGAGACCTTCCTCGGGGCTCTAGCCTCGCGCTGCGCACAAGGCGACGGCGCGACGTGCTGCAACGCGTGCGGCGTGCAGTTCGCGAGCGAATTCGCGCTCGCTCGCCACGCCGCGCTCGCGCTCGCGCCCTGCTCGCAGACCAGCGCGTGCGCGCTGTGCGGCGAGAACTTCAAGGACGAGGCGGCTCTGCAGCAGCACAGTCGCGAACGGCACAGCGATCAGCAGGCCACCTGCCAGGAGTGCAACATGACGTTCGCGACGGAGGCGTCTCGCAGCGTGCACTTCGAGCGCGTTCACCTCAAGGTCAAGGTGCGCCGGCGCCTGCCCAAGACCGGCCGCCGCTACGACCGCTACGGCGACCACTTCATGTGCGAGATGTGCGGGAAGAAGTGCCAGAACAACATAGCCCTCAAGTACCACATCCGCTCGCACACCGGGGAGAAGCCCCACGCCTGTCCGCACTGCCCGAAGCACTACTCCACGCCCGTCGCGTTACAGTACCACATCCGCTCGCACACGGGCGACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGGTACACTGCCGCCGCACACCGTTACACGACGTTACACTACATAACATAACACTACACAAGCCGCTGGCGTGTCCGCACCCGCACTGCCCGCTGCGCTACGCCACGCACAAGGGACTGCAGACGCATCTCCTGAAGCACACCGGCGAACGGCCGTTCAAGTGCGACCTGTGCGGGAAAGCCTTCACACAGAAAACTATGCTGCAGAAACACAAAACTGTTCACACGGGTGAGAAGCCGTTCGCGTGCGACATCTGCGGCAAGACGTTCACACAGTCAGGCTCCGTGCACACACACGTCAAGTACGTGCACAAAAAGCTGCCAGCGCCACCGCGCAACCGCGGGAAGCATAAGCTGCCTCACAGTTAG
- Protein Sequence
- MELLKVEETEELQACRICLATDTELYSILEHRLDNAFVEIMGTMLSAWDGFPQHVCGWCRRLLRRSAEFRARGARAHAALARRAHAHAITTEFVRTLDRAALRLTLPLATAEAAPALRCWHELKREPEPPPEPPASPASPAPLKQEDLAGHYSDGADSDRMSLKYEDDSADDVALSQLRAQPPPPPKRKKKVLRKTKVKKVKPEKKERRKTEKIRDEDFPAFEKEYNIDVVILNHEQQIEDMAARKGRDNYMNSLFKCDLCFKGFYTEATLKNHHVKHHDESVGPHECSLCRCRFRIPAILRRHAETHRLRFVCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDSFKKRSTYGTHVRIQHPNQNKSCDVCGETFLGALGLALHKKKTHRQVPLQYSPSITACGETFLGALDSRCTIRRTDSLALRSKTHRQVPLQYSPSIAACGETFLGALASRCAQGDGATCCNACGVQFASEFALARHAALALAPCSQTSACALCGENFKDEAALQQHSRERHSDQQATCQECNMTFATEASRSVHFERVHLKVKVRRRLPKTGRRYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQVHCRRTPLHDVTLHNITLHKPLACPHPHCPLRYATHKGLQTHLLKHTGERPFKCDLCGKAFTQKTMLQKHKTVHTGEKPFACDICGKTFTQSGSVHTHVKYVHKKLPAPPRNRGKHKLPHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -