Basic Information

Gene Symbol
Hivep1
Assembly
GCA_947563465.1
Location
OX387371.1:5376557-5386256[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 8.4e-05 0.0061 17.7 0.5 1 23 116 139 116 139 0.95
2 6 0.1 7.5 8.0 0.2 3 20 148 165 147 167 0.92
3 6 0.00032 0.023 15.9 0.3 1 23 179 202 179 202 0.92
4 6 4.9e-05 0.0035 18.5 2.9 1 23 208 231 208 231 0.98
5 6 5.5e-05 0.004 18.3 0.7 3 23 242 262 241 262 0.97
6 6 0.032 2.3 9.6 0.2 3 23 270 291 268 292 0.94

Sequence Information

Coding Sequence
ATGTGGTGGTCCGGACCAAAAATGCTACACGAACGCACTAACTTTGATGATTGGCGTTCATCCTCCCTCGACATTCCCCCTACACAACTAGAAGTTAAAGAAAAATCCACAATTACTGAACAGAACCTCACTGTGATGTCTGCGAGTGTGTCGAGCGAAGATGACGAAAGACTCATTTATATCAAGAGATATTCTTCCTTGACAAGACTGATTCGCGTCACAGCGTATATAATTCGATTTGTTAGAAATTGTAAATGTCGTATTGAAACCAAAAGTAATCAAACTGCTTATGAAGCTTTGCCTCAGTATCTGACCGTTAGCGAATTACGGAAGCAGCACTCTCCGTTCGTGTGCAAGCAGTGCGACAAGCGATTCGCGCGGTACAACGGACTGTGGCTACACAACAAGGTGTGGCACACGGCGCCCGCGCAGGGCGCGTACTGCGTGGAGTGCGACCGCCGGTACGACGACGTGTACCGCTACCGCCGTCACCTCAGCAACAGCACGAGGCACCGCCCACGGAAAAAGACGCGGTTCCCATGTGCGGGCTGCGACAAAGTGTTCACGAAGAAGATCTACATGAAGGATCACTACGACCTCGTGCACCTTCAGAAGTACAAATACAGATGCGAACAGTGCGACAAGAATTTTCTGCGTAATGCGGACTTGACGCACCATCGACGGCGCATACACGAAGGCATCCTCCCGCCCCGAAACAAGATCTGCTACATGTGCGGGAGAGGGTTTACTACAAAGAAGATCCTGGTGAACCACATGCGCACGCACACCGGCGAGCGGCCGTTCGGGTGCGCGCGCTGCTCGGCCGCGTTCGCGCAGCGCGCCGCGCTCGTCTCGCACATCAAAGCCAAACACCACTAG
Protein Sequence
MWWSGPKMLHERTNFDDWRSSSLDIPPTQLEVKEKSTITEQNLTVMSASVSSEDDERLIYIKRYSSLTRLIRVTAYIIRFVRNCKCRIETKSNQTAYEALPQYLTVSELRKQHSPFVCKQCDKRFARYNGLWLHNKVWHTAPAQGAYCVECDRRYDDVYRYRRHLSNSTRHRPRKKTRFPCAGCDKVFTKKIYMKDHYDLVHLQKYKYRCEQCDKNFLRNADLTHHRRRIHEGILPPRNKICYMCGRGFTTKKILVNHMRTHTGERPFGCARCSAAFAQRAALVSHIKAKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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