Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387343.1:18381333-18388301[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.15 11 7.4 0.0 3 23 39 59 38 59 0.97

2 8 0.056 4.1 8.8 0.7 2 23 162 184 161 184 0.93

3 8 4.2e-06 0.00031 21.8 0.9 1 23 197 220 197 220 0.98

4 8 6.9e-05 0.005 18.0 5.8 2 23 263 284 262 284 0.97

5 8 0.0017 0.12 13.6 4.3 1 23 290 312 290 312 0.96

6 8 0.00011 0.0077 17.4 5.1 1 23 318 340 318 340 0.97

7 8 1.5e-05 0.0011 20.0 3.4 1 23 346 368 346 368 0.98

8 8 0.035 2.6 9.5 4.2 1 20 374 393 374 395 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.15	11	7.4	0.0	3	23	39	59	38	59	0.97
2	8	0.056	4.1	8.8	0.7	2	23	162	184	161	184	0.93
3	8	4.2e-06	0.00031	21.8	0.9	1	23	197	220	197	220	0.98
4	8	6.9e-05	0.005	18.0	5.8	2	23	263	284	262	284	0.97
5	8	0.0017	0.12	13.6	4.3	1	23	290	312	290	312	0.96
6	8	0.00011	0.0077	17.4	5.1	1	23	318	340	318	340	0.97
7	8	1.5e-05	0.0011	20.0	3.4	1	23	346	368	346	368	0.98
8	8	0.035	2.6	9.5	4.2	1	20	374	393	374	395	0.93

Sequence Information

Coding Sequence: ATGAGTGCTGATGCAGCATCTTTGCCTTGCCCTATTTGTCTACAAAGTGGAATTTTCGAATCAGTGCAGTCACTCAGAGACAGGCTTATTTACGTATCAACTAATAAAATATTGTGTCCCGTTTGCCAGGAAGAGGTATCTGGACTAGACAAATTAACTATACATTTATTTAGCCATGTGAAATTACTAACTACTAAAGAGTATAGTAAGACAAATGGGTTCATGGAGGCAGCGTGTAAACCGAAAAGAGAAATCCAAGTTGTAACTGGTCCACAGAAGAAATCCAGATCGCAGACGGCTAAAAATAAATCATCCACTTCTACGGCAAACGTCCCCGTGAAATTCGTAAAGATATATCCAAAGTTGCCAGTGATGCCCGTAAGCGCGGCGCCAGTTTTAGACACATCGAGTGAACACGCGGACAGCGCTGTTCAAGTCAGTGCTTCGATCAAGACGGAAGCTGCGCTCTTACCAACTAACACAACTTGTGAGATATGCGGTCTACAATTCGTCGATTCGAATATTCTACGAATGCATAGGTGTCTTATACATAATATAGATGATAATTCCAATCAAAATGTTACTAGGTATCAATGTCACTTGTGTCCAAAAAACTTTAAAATGAGAGGATCCCTCATGGTCCACTTACGAGTTGCACATTACGGCTTTCAACCCGACAACACCAGCCCGCGAACTGGCGCTAGCGAAAGCGCTGGGCCTGAAGAGCAAGACTTCTCCGCTGGGGACAAGCCCAAAACTTTTGAGAAAAATGATAATAAACAATGGCAGTGCGATGTTTGTCGAAAGTGCTTTACTACAAAGTACTTCCTGAAGAAACATAAACGCCTTCATACAGGCGAAACTCCTTACGCCTGCGCGCAATGCAATAAGACGTTCACGTTCCAACAATCGTACCACAAGCACCTGCTTTACCACAACGACGAGAAGCCGCACTCCTGCGCGCACTGCGGCCGCGCCTTCAAGGAGTTGTCCACGCTGCACAATCACCAGCGCATCCACACCGGAGAAAAACCTTTCTCGTGTGAAACATGCGGTAAATGTTTTCGTCAGCGAGTCTCCTATCTTGTCCACCGACGGATTCACACAGGCGTTATGCCTTATAAATGTACAGCGTGTGATAAAAGTTTTCGCTACAAGGTGTCACAAAGGACTCATAAATGCCAAGCGCAACCACCAGGTACCGTGGTGCGGCAGAGTGGTGACTTATTGGAAAAACTTAAAATAAAGCACCCATCCCAAGTTGGTTTTGACTGCGTAGACTCTACGATTGACAAGATCAATTATCACCACGTTTCCGAAGCAAACGCAGAATTGGTACGAACTGGTGCAAAACTTTCATTGGAAGACACTGAGGCTGATAACTTTACTTTAATCGCTGAAGCATTTTATGACAGTAATAAAAATAACGTGACAGAATCAACACATCACGTCGAACATAATAACCTAGTGAGTACAAATATGGTTGGTGAATGTAACATGCCAATAATCGATAAAAATGTTCCCTCGCCTTCAGAAATATTAAAAAACTTGTGTTTGTCTAAAGATGAAGATCTTACAGGAAATCGACAGGAGCGTGACGAAACAGATTACAACATATATAAAGATTTCAATTTATTTTTGTAA
Protein Sequence: MSADAASLPCPICLQSGIFESVQSLRDRLIYVSTNKILCPVCQEEVSGLDKLTIHLFSHVKLLTTKEYSKTNGFMEAACKPKREIQVVTGPQKKSRSQTAKNKSSTSTANVPVKFVKIYPKLPVMPVSAAPVLDTSSEHADSAVQVSASIKTEAALLPTNTTCEICGLQFVDSNILRMHRCLIHNIDDNSNQNVTRYQCHLCPKNFKMRGSLMVHLRVAHYGFQPDNTSPRTGASESAGPEEQDFSAGDKPKTFEKNDNKQWQCDVCRKCFTTKYFLKKHKRLHTGETPYACAQCNKTFTFQQSYHKHLLYHNDEKPHSCAHCGRAFKELSTLHNHQRIHTGEKPFSCETCGKCFRQRVSYLVHRRIHTGVMPYKCTACDKSFRYKVSQRTHKCQAQPPGTVVRQSGDLLEKLKIKHPSQVGFDCVDSTIDKINYHHVSEANAELVRTGAKLSLEDTEADNFTLIAEAFYDSNKNNVTESTHHVEHNNLVSTNMVGECNMPIIDKNVPSPSEILKNLCLSKDEDLTGNRQERDETDYNIYKDFNLFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01135202;
90% Identity: -
80% Identity: -