Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387371.1:5402448-5415565[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00047 0.034 15.4 6.6 1 23 485 508 485 508 0.98

2 9 0.011 0.81 11.0 1.2 1 23 522 544 522 544 0.97

3 9 0.31 22 6.5 0.5 1 21 548 568 548 571 0.74

4 9 0.36 26 6.3 3.6 1 23 577 600 577 600 0.94

5 9 0.0025 0.18 13.1 0.1 3 23 605 625 603 625 0.97

6 9 0.013 0.93 10.8 1.3 3 23 669 690 668 690 0.92

7 9 1.1e-06 8.4e-05 23.6 1.4 1 23 696 719 696 719 0.96

8 9 1.7e-05 0.0013 19.9 1.6 3 23 730 750 729 750 0.99

9 9 0.00014 0.01 17.0 0.5 1 23 756 779 756 779 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00047	0.034	15.4	6.6	1	23	485	508	485	508	0.98
2	9	0.011	0.81	11.0	1.2	1	23	522	544	522	544	0.97
3	9	0.31	22	6.5	0.5	1	21	548	568	548	571	0.74
4	9	0.36	26	6.3	3.6	1	23	577	600	577	600	0.94
5	9	0.0025	0.18	13.1	0.1	3	23	605	625	603	625	0.97
6	9	0.013	0.93	10.8	1.3	3	23	669	690	668	690	0.92
7	9	1.1e-06	8.4e-05	23.6	1.4	1	23	696	719	696	719	0.96
8	9	1.7e-05	0.0013	19.9	1.6	3	23	730	750	729	750	0.99
9	9	0.00014	0.01	17.0	0.5	1	23	756	779	756	779	0.96

Sequence Information

Coding Sequence: ATGTACGGCGTAAAAAGGGAATCTAACGAAGAAATATGCCGCGGCTGCCTCAGCACCGACCGGAGACTGTCGCCTCTGGCTAATTATGATTTGTTTTTTACTCTTTTGGAGGACAAACAAAAGTTAGAGGCATTGAAGTCTCCGACCTTGCGCCTGTGCTGGGAATGCAATGCGTCGCTGCAGAGGATGAGTGTGTTTCAGACACAAGCACGGCATGCTCATAGGCTCCTAGAAGAACTTGTGAATGAATTGCCTACCAGAGGATTATCCCAACTCACCACTTGTTATAAACAAGATTATGATGTCGTAATTGAAGATGGAGTTGATGGTATTGAAGAACAATTTGTAATTCCAATCAAAGAAGAAACTAAAGGTCAAATAGATGTGTTAAATCATACTATTTATCCTTGTGATGATCACTTTTTTGATGAGACTGATAATTTAGAGACGCATGTTGAATTAGATTTAGTAGAAGAAACAAGAGAGAACGATTTAATAGAAGCTATACCACAAAATAAATACAAACGTAAGCTTAAAAGACTTAAAACTACTTCTGTACAAACCAAAAATAAAAGGAAAAAAATTGAAACAGTTGTAATTAAAAAAAGTAATAGAACAGGTTTAAGAAGTTCAGGAGAAATTATTCCTCCATTGTATCCAAATAAGGATAATGGTAATAAAAAAGACTCCATAAAGAGTAAAATTAAAGTTAGTAATACAAGAGAATTTAAACAACTAAAGCGTAAGAGATGCTTAAATAGAAGAGATCCAACAAATACAGTTAAAGTGGAGAAAGAAAACCAGACACTTTATGGTAAAGATAAGGCTATAAAAGATTTACAAAATATGGTCACTAATGATAAAGCTGAAGCTTATACAGAGTTAGACATAGAAAATCTAGATGTTAAAAATACAAAAGAGCAAATTGATGATGATGATATTGATCAAAACAATCATTTAAATGATAGTGAAGGTGAAAATGATAATTGTGACAAGAATGATCCTGATTTTGAGGAAGAAAGTAGTAATGATTCAAAGAATAAAGTTGGTAAAGGTAAGGGTACAAAAAAATTACAAAATATGGTCACTAATGATAAAGCTGAAGATAATACAGAGTTAGAGGTAGAAAATCTAGATGTTAAAAATACAAAAGAGAAAATTGATGATGATGATATTGAACAAAACAATCATTTAAATGAGAGTGAAGGTGAAAATGATAATTTTGACAAGAATGATCCTGATTTTGAGGAAGAATGTAGTAGTGATTCAAATAATAAAGTTAAAATTAAGAAAACAGGTGTAGCAAACAGAGATAGATGGTTGCGCTGTGTTTGTATAAGGTTTGACGTGATTAACGAATTGGATGAATACTTTACTAAAGTTGATTTAACTCCTGAAGAGCTTAAAAGTATTCTAGATAGTGAACTTTCATACAAAACTGAAGGGCAACCGTATAGCTGCAATTATTGCGGTTACTGCTTCCAACAGACTAAAACATTAAAAATGCATAAGAGAACCCGACACAAGCAAATCGCCAAATGCAAAAATCGGGTGTATTTGATGTATCGTTGCAACATTTGTAATAAAATTATAAGAAAAGACCATGCAGAGGCACATATGAAATATTTGCACCGCTGGAAGTACTATTGCAAAGAGTGTGACAAAGATTTTTGGGACAAAGCAGAGGGCAGGAGTCACTATAATGAGGTCCATAAGGAGGTGAAATGGCATAACTGTAGTTTATGCCGCTACGTTTGCGCCTCTAGGAAGGTTCTGGAGAAGCATGTGAGGGACCGGCACACTCCCATGGCGTGCGACGAGTGCGGCAAGCTGACCGCCGGCGCTGACTACCTGCAGCTGCACCAGCGGCGGCACCGGCGCGACGGCAGCGCGCCCGAGCAGCGCTACTGCGTGCCGTGCGACAAGCACTTCCTCTCTGTCTACACCTACCAGCTGCATCTCAAGGCCAGCACCGTGCATAGGGGGAGGACGAAGAGAGTCTTTTGCACGGAATGCGGCAAGGAAATGAGTAACAAGACTAGCCTGCGATCGCACTACGACTACTTCCACAGCGACAAGACGCAGTTCCAATGCCCGCACTGTGACAAGAACTACTCGCGTAAGTCTGGCTTGCGCATGCACATTGATTCAGTGCATCTGAAGAAGAAACTTCCCAAAGACAAGCTGTGCAGCATATGCGGCCGCGGGTTCTCTTCGGTCCGCACCCTAACGCACCACATACGCACGCACACAGGCGAACGTCCCCACGTGTGCCCACACTGCTCAGCCGCATTCGCCCAGCCCTACCCGCTACGTAAACATCTGGCCACGCAGCATGGGGTGACCCCCGCCCAGAACAAAGAGGCCCCCACTACGCAAAATAAAGAGACCCCCACAATACAAGCGTGA
Protein Sequence: MYGVKRESNEEICRGCLSTDRRLSPLANYDLFFTLLEDKQKLEALKSPTLRLCWECNASLQRMSVFQTQARHAHRLLEELVNELPTRGLSQLTTCYKQDYDVVIEDGVDGIEEQFVIPIKEETKGQIDVLNHTIYPCDDHFFDETDNLETHVELDLVEETRENDLIEAIPQNKYKRKLKRLKTTSVQTKNKRKKIETVVIKKSNRTGLRSSGEIIPPLYPNKDNGNKKDSIKSKIKVSNTREFKQLKRKRCLNRRDPTNTVKVEKENQTLYGKDKAIKDLQNMVTNDKAEAYTELDIENLDVKNTKEQIDDDDIDQNNHLNDSEGENDNCDKNDPDFEEESSNDSKNKVGKGKGTKKLQNMVTNDKAEDNTELEVENLDVKNTKEKIDDDDIEQNNHLNESEGENDNFDKNDPDFEEECSSDSNNKVKIKKTGVANRDRWLRCVCIRFDVINELDEYFTKVDLTPEELKSILDSELSYKTEGQPYSCNYCGYCFQQTKTLKMHKRTRHKQIAKCKNRVYLMYRCNICNKIIRKDHAEAHMKYLHRWKYYCKECDKDFWDKAEGRSHYNEVHKEVKWHNCSLCRYVCASRKVLEKHVRDRHTPMACDECGKLTAGADYLQLHQRRHRRDGSAPEQRYCVPCDKHFLSVYTYQLHLKASTVHRGRTKRVFCTECGKEMSNKTSLRSHYDYFHSDKTQFQCPHCDKNYSRKSGLRMHIDSVHLKKKLPKDKLCSICGRGFSSVRTLTHHIRTHTGERPHVCPHCSAAFAQPYPLRKHLATQHGVTPAQNKEAPTTQNKETPTIQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155663;
90% Identity: iTF_00155663;
80% Identity: -