Axyl024035.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- Zeb1
- Assembly
- GCA_947563465.1
- Location
- OX387371.1:1527162-1547807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.3e-05 0.0046 18.1 2.0 1 23 146 168 146 168 0.98 2 10 0.019 1.4 10.3 0.2 1 23 175 198 175 198 0.97 3 10 1.7 1.3e+02 4.2 1.8 1 23 202 224 202 224 0.92 4 10 0.0085 0.62 11.4 1.1 1 23 229 252 229 252 0.93 5 10 0.15 11 7.5 0.3 3 23 258 279 257 279 0.96 6 10 0.0058 0.42 11.9 0.0 3 20 292 309 291 311 0.94 7 10 0.00099 0.072 14.3 0.3 3 23 324 344 323 344 0.96 8 10 0.00057 0.041 15.1 0.2 2 23 351 373 350 373 0.96 9 10 1.9e-05 0.0014 19.8 0.7 2 23 389 410 388 410 0.97 10 10 0.014 1 10.7 0.2 1 16 416 431 416 433 0.84
Sequence Information
- Coding Sequence
- ATGCTGTCGACAGACTACATAAGAACAATAGACCGAAGCCTCTATAGTCTTACTCATCCATACACAACGATAACATGCCCATCCTTCGATAACCCAGACATCAAAGAAGAAAAAATAGATGTCGCAGACTTAATAGACAATAAAGATCACATAGACAACGTAGACAACATTGACAATGTAGACAGTATAGAAGTGAAATATGAGTCTGATGAAGAACCGTTAGCAAAAAAAGCTAAGAGAAAACGTAAAAGGAAAATCATGGTGATAGTGAAGGAAAATGACGATTTTGAGTTTGAAAATGACGCAGATAAAGTAGTAGATGATCAGAAGCAAATTAAAAACATGAATGATATTGAAATTGTGACACTGACTAAAGAAGAGCAAATCAACGAAGTGACGCTGAGGAAGACTTCATTCAATTACTTGAATTCATTTTATAAATGCGACAAATGTTATAAAGGTTTCGTAACGGATTCTACGTATAAGAATCACATGGCGAGGCATGCTGTGATAAGCGGCGCGTACGCATGCGACGTGTGCCACACGCGCTGGCCCAACCCGCGCGCGCTTCGCTCCCACTTGATCACGACGCACGAGCGGAAGTACGTCTGCCGGAAGTGCGACCACGTGGCCAAGTCCAGCTACAGAGCGAAAGAGCACAGCAAATGGCACCTCGGCTTCACGTATGAGTGTAAAATATGCGGCGCCACGTTCGCCAAATCCACGAGTCACCTCACACATGTGCGCCTTCAGCACCCTTCGGACAACTGTTGCGAGCTCTGTGGCGACTCCTTCATCGGGGAATATGGACTGGCCATGCATCGGAAGAAAGCGCATAGAGACGAGATCGGTAAAGTGAAATCCGAGTCGCTCTGTGTCCTGTGCGGGGTCCAGTTTAGGAGCTTGGACGCTCTGAACAGACACATAAGCGGCGCCGAAGACAACAAGTGTAACACAGACTTAAGGCCGTGCTTGTCATGCGGCGAGGGATTCGAAACCGAAAAATCCCTGAAGGAACATCTGAAAAGACATGCGAAGGACGACAATGTCAAGTGCGAAGAGTGTGACCGCACCTTCGCTAGTGGGAAGTCGTTCGCTGTTCACTACCAACGGGTGCATTTACGTGTGAAACAGACCGCCCGGAGCGAGCTCGCCGACCGGATCGTCTGCGAGATATGCGGGAAGAAGTGCATCTCTAACGCTACGTTGGTGTACCACCAGAGGACCCATACGGGGGAGAAGCCCTACCAGTGCAGCGAGTGCCCTAAGCGGTTCAGCGTCTTCCAACTCTTGCAGGTGAAGGGTCCACATTTGTATCATTCTACACTTCGTATTTTTTTGCCGCGGACGCCCGCCGCGTGTGTCCCCGGCAGCTAG
- Protein Sequence
- MLSTDYIRTIDRSLYSLTHPYTTITCPSFDNPDIKEEKIDVADLIDNKDHIDNVDNIDNVDSIEVKYESDEEPLAKKAKRKRKRKIMVIVKENDDFEFENDADKVVDDQKQIKNMNDIEIVTLTKEEQINEVTLRKTSFNYLNSFYKCDKCYKGFVTDSTYKNHMARHAVISGAYACDVCHTRWPNPRALRSHLITTHERKYVCRKCDHVAKSSYRAKEHSKWHLGFTYECKICGATFAKSTSHLTHVRLQHPSDNCCELCGDSFIGEYGLAMHRKKAHRDEIGKVKSESLCVLCGVQFRSLDALNRHISGAEDNKCNTDLRPCLSCGEGFETEKSLKEHLKRHAKDDNVKCEECDRTFASGKSFAVHYQRVHLRVKQTARSELADRIVCEICGKKCISNATLVYHQRTHTGEKPYQCSECPKRFSVFQLLQVKGPHLYHSTLRIFLPRTPAACVPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -