Basic Information

Insect: Archips xylosteana
Gene Symbol: Arc1
Assembly: GCA_947563465.1
Location: OX387343.1:2387071-2400129[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3e-05 0.0022 19.1 1.8 2 23 389 411 388 411 0.95

2 8 1.7e-05 0.0013 19.9 0.2 1 23 416 438 416 438 0.97

3 8 0.00047 0.034 15.4 0.4 6 23 448 465 447 465 0.99

4 8 0.00032 0.023 15.9 2.3 1 23 471 493 471 493 0.96

5 8 1.8e-07 1.3e-05 26.1 0.2 1 23 499 521 499 521 0.96

6 8 0.016 1.2 10.5 0.8 1 23 527 549 527 549 0.96

7 8 0.008 0.58 11.5 4.1 1 23 555 577 555 577 0.97

8 8 0.0009 0.065 14.5 0.4 1 23 583 606 583 606 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3e-05	0.0022	19.1	1.8	2	23	389	411	388	411	0.95
2	8	1.7e-05	0.0013	19.9	0.2	1	23	416	438	416	438	0.97
3	8	0.00047	0.034	15.4	0.4	6	23	448	465	447	465	0.99
4	8	0.00032	0.023	15.9	2.3	1	23	471	493	471	493	0.96
5	8	1.8e-07	1.3e-05	26.1	0.2	1	23	499	521	499	521	0.96
6	8	0.016	1.2	10.5	0.8	1	23	527	549	527	549	0.96
7	8	0.008	0.58	11.5	4.1	1	23	555	577	555	577	0.97
8	8	0.0009	0.065	14.5	0.4	1	23	583	606	583	606	0.98

Sequence Information

Coding Sequence: ATGATGACTCGTTCCGGTCGCACACCGAGTACTCCAGATCAACCGCGAGCGTCTACATCAAACGACGACGCCGCCGCCGCAGATCACCATTCGGATGAGGATTATGGTGAACGCCCTGGAAATGTGACGATGACGATGGATAACCTGTCCATTTTGCTGCAAACTATTCAGCAATCTAACGCCGACATGTTCCAGCGGTTACTGCACGAAGTTCGTTCTTCAACCCCGGCTTCGGGCGAGCCCGTCAACGTGACCGTCGCCGCCCCCGCCCCTGTCGTGACCGGCAATTTTTCTAAATGCCAAGCCACTTACAGCGGCCGCGCCGAGGAAAGTCTGGAGGGATTTATCGACGCAGTGGAAGCCTTCAAGGATTGCTGCCGAGTGACTGACGAGAACGTCAttagaggtttttcaatattgctgactcattccgccgcaacctggtggcaaggaatcaaGGGTACTACGACATCCTGGGCGGAGGCCCTGGATCGACTTCGACGAGCCTTCGGAGACCGTCGCCCACCCCACCGGTTATATCGCGATTTATTCGATAACGAGCAGCAGATCAACGAGAATACCGACAAGTTCGTAGCTCGAGCTCGAGCAATACTCGCCCGAATTCCTGTTGAGGACCTCACAGAGAAAGCACGACTGGATATGGTGTACGGCTTACTACATCATCGCATCCGGGAACGCCTTCGTCGTGAAGAGTTCCAGTCTTTTGACGAGCTACTCAGCAGAGCTCATTCTATCGAAGACGCATTAGAGGTAACAGGAGTGTCTCGCTCAAGCGCAGGGAAGCCGCCAGCCGCCGGCCCCGCGCGCCGCTCGACATCAAACGCGCCGCCACCGCCGCCGCCGTCGTCGTCACCGACCCCGACTAGCGCGAGTACAAGCATCGCGGATACGCACAAAAAGAAACTTAAGGCTGGCATTTCGATGGATTTTGCAACTTCCAAGTGGCACTTCTCTGAAGAACATACACGGTATCCTATAGAGTTCGAGTCGCCGAGTAATCATGTCACGTGTTCATCAGCGGACATACTCCGGAGCGACGAAGGTATCATGCTGCAACCTTCTCAACGTGATAAACTGGCAGACGTAGCTAAAGATGAAATTATAGTTAAAGAAAGTAAGAAGATGGGCAGTCAATGGAAGCTTGAGTGTACACAGTGCAAGAAAAGTTTTCGGTCTAAAGTTTGGTACGAGAAGCATTTGAGGAACCAACATGGGGGAAAGGTGTACAGCTGCCCGCAGTGTCCAAAGACGTTCCAGAAGCCCTCTCAGCTCTCAGTGCACGCGGTCACTCACTCCGACGAACGCAAGTTCGCGTGCGCGTGCGGCAAACGCTACAAGCGGCGGAAGGAGTTGACTATACATGCGCGGACGCACGCCGACGAGCGGCCTTACCAGTGCGACCATTGCAACATGAGCTTCAAATTGAAGAGCGTGCTCAAAAGCCACTTGGTGCTTCACCAGCCTGACAAGCCGTACCTCTGCTCTGTGTGTGGATGGAGGTTCACGCAAGCGGGCAATCTCTCAGTGCACATGCGGACGCACACTGGCGTCAAACCGCACGCGTGTACGCGGTGCGGTTTCCGCGCAGCGGCTGCTTCCTCGCTGCGGCGACACGAGCGGCGACACCGGGCGTTGCGCCCCCACCGATGCCGGGCCTGCCGGAAGGGTTTCCACGACAAAGGGGCGCTGACTCGTCACGAGCGCTCGCACAGCGGCGCGCGACCGTACCAGTGCCCGGGATGCACCCTGCGCTTCGCGGACAGCTGGAAGCGAAAGACGCATCTCATGCGCGCGCACCGCACGCCGCTCGCGCGCATACCGCGCATGCGCGCCGACGCCAGCGCGCTGCCCTGA
Protein Sequence: MMTRSGRTPSTPDQPRASTSNDDAAAADHHSDEDYGERPGNVTMTMDNLSILLQTIQQSNADMFQRLLHEVRSSTPASGEPVNVTVAAPAPVVTGNFSKCQATYSGRAEESLEGFIDAVEAFKDCCRVTDENVIRGFSILLTHSAATWWQGIKGTTTSWAEALDRLRRAFGDRRPPHRLYRDLFDNEQQINENTDKFVARARAILARIPVEDLTEKARLDMVYGLLHHRIRERLRREEFQSFDELLSRAHSIEDALEVTGVSRSSAGKPPAAGPARRSTSNAPPPPPPSSSPTPTSASTSIADTHKKKLKAGISMDFATSKWHFSEEHTRYPIEFESPSNHVTCSSADILRSDEGIMLQPSQRDKLADVAKDEIIVKESKKMGSQWKLECTQCKKSFRSKVWYEKHLRNQHGGKVYSCPQCPKTFQKPSQLSVHAVTHSDERKFACACGKRYKRRKELTIHARTHADERPYQCDHCNMSFKLKSVLKSHLVLHQPDKPYLCSVCGWRFTQAGNLSVHMRTHTGVKPHACTRCGFRAAAASSLRRHERRHRALRPHRCRACRKGFHDKGALTRHERSHSGARPYQCPGCTLRFADSWKRKTHLMRAHRTPLARIPRMRADASALP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -