Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387373.1:10074518-10075447[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.4e-06 0.0001 23.3 0.9 2 23 94 115 93 115 0.96

2 7 0.00015 0.011 17.0 1.5 1 23 121 143 121 143 0.98

3 7 4.1e-06 0.0003 21.9 2.6 1 23 169 191 169 191 0.98

4 7 5.3e-07 3.8e-05 24.6 2.2 1 23 197 219 197 219 0.98

5 7 1.6e-05 0.0012 19.9 3.4 1 23 225 247 225 247 0.98

6 7 0.00013 0.0095 17.1 3.8 1 21 253 273 253 275 0.94

7 7 0.00013 0.0092 17.2 2.2 1 23 281 303 281 303 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.4e-06	0.0001	23.3	0.9	2	23	94	115	93	115	0.96
2	7	0.00015	0.011	17.0	1.5	1	23	121	143	121	143	0.98
3	7	4.1e-06	0.0003	21.9	2.6	1	23	169	191	169	191	0.98
4	7	5.3e-07	3.8e-05	24.6	2.2	1	23	197	219	197	219	0.98
5	7	1.6e-05	0.0012	19.9	3.4	1	23	225	247	225	247	0.98
6	7	0.00013	0.0095	17.1	3.8	1	21	253	273	253	275	0.94
7	7	0.00013	0.0092	17.2	2.2	1	23	281	303	281	303	0.98

Sequence Information

Coding Sequence: ATGGAGGCGGCTGAAGAAAATATACCGATTGAAAAACCATTCACAATAGAAATAGAACCTAAAGTAGAACCAGAGCTGATAACTGTCAAAATTGAACCCATACAATTTGATGAAGATTATGAAGCACCCTCTAAGAACAATCAAACATTAGAAGCATCTCCAGTAAAAGTCGAAATGCACTGCAATAATGTTCAAACTGAAGAGAAAACAATAGAATCAAAAGATCATTTAACAGATGCTACCATAGAAATTCAACCTAAAAAAGATGACAAAAAGCTAATATGCAATATATGTTTAAAAGAGTTCAAGTACAAGTCCAGTTTGAGGAGGCACATAAAAATTCACACGGGTGAGAATCTCTTCACCTGCAACGTGTGTGAAAAGCAATTGTGTGATAAAATTAGTCTGATAAAGCATCTACGCGGGCACTCAGGCGAAAAACCGTACGCTTGCGGCATATGCAAGCAGCTAGGAGACCACAAAGTCCACACACATGAGAAAAAGTACTCGTGTGACACATGCAATAAGCAGTTTACGAAAAGTTCTACGTTGGCAAGGCATAAGTTGACGCACAACGACGAGAAACCGTACACTTGCGATATATGCGAGAGGCAGTTCACACAGAAATCTAATTTGATGCGGCACAAGCAGAATCACACCAACAAGAAGCCGTACAGTTGTTCGATGTGTGAGAAAAAGTTCACACAGGTGTCTAGCTTGAAGCACCATGAACTCACACACACTAGAAAGAATAATTTTGTTTGTGGGATCTGTAATAAGGATTTTCCGTTTTCTTCGCACCTTCAGAGGCATGAGAGGTGTCACACTAAACAGAAACCATTCCAGTGTGATATTTGCATGAAGCATTTCACAGACGCCTTCAATGTGCGAAGGCATGTGCGGCTACATTTAGAAGGTAAGAGGATATAA
Protein Sequence: MEAAEENIPIEKPFTIEIEPKVEPELITVKIEPIQFDEDYEAPSKNNQTLEASPVKVEMHCNNVQTEEKTIESKDHLTDATIEIQPKKDDKKLICNICLKEFKYKSSLRRHIKIHTGENLFTCNVCEKQLCDKISLIKHLRGHSGEKPYACGICKQLGDHKVHTHEKKYSCDTCNKQFTKSSTLARHKLTHNDEKPYTCDICERQFTQKSNLMRHKQNHTNKKPYSCSMCEKKFTQVSSLKHHELTHTRKNNFVCGICNKDFPFSSHLQRHERCHTKQKPFQCDICMKHFTDAFNVRRHVRLHLEGKRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00155595;
90% Identity: iTF_00155595;
80% Identity: -