Axyl022092.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387350.1:17350943-17357843[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00093 0.067 14.4 0.3 3 23 171 191 170 191 0.95 2 11 0.9 65 5.0 1.2 1 23 195 218 195 218 0.92 3 11 0.035 2.6 9.5 2.2 2 17 224 239 223 242 0.90 4 11 0.00073 0.053 14.8 0.7 3 20 256 273 254 277 0.92 5 11 2.4e-05 0.0017 19.4 0.4 1 23 282 304 282 304 0.96 6 11 0.0056 0.41 12.0 0.4 1 23 310 333 310 333 0.94 7 11 0.0053 0.38 12.1 0.7 2 22 339 359 338 359 0.92 8 11 0.07 5.1 8.5 0.6 3 23 365 383 364 383 0.95 9 11 0.00031 0.023 15.9 0.3 1 23 389 411 389 411 0.96 10 11 0.00014 0.01 17.0 0.9 2 23 418 439 417 439 0.98 11 11 1e-05 0.00074 20.6 2.9 1 23 445 467 445 467 0.98
Sequence Information
- Coding Sequence
- ATGAATTTATGTAGAGCATGTTTGTCATCGGATGTAGAATTGAATACAATTGATGCTAGTTTTGTTTATGATTACAATTTGCTTACGAATTTAAATGTCCAGCTGATGGATGGGAAGTCCCAATGTTTCTGTCAAACTTGTGTGGAAACTGTTAACTACTTTATAGAGTTCAGAAATAAATGCACATCTTCTGAGTTGACTCTGCAACAAACCTGCTCTAGTAATGCTGTTAAAATGGAAGATCAGGTGCAAGATGACATGCAAATGATTATTAAAGGGGAAATTAAACATGAGAATGATGATTCTAGTTACGAAGCTGAGTTTGATGCTAAACCAGAATATGATGATGAGTATGAATTCAAACTAGAAAAAAAATATGATCAACCAGAGAAAAAACCAAAAAAACGATTGAAGAAAAAGAAGACAGTTAAAATTAATAAAAAAATAAAAAATGAGAAACCTCATAATTTATATGAAAACTATATTAAAATATTAGGTGACAATCCAGCTTGTGGATTGTGCGGCAAGGTATTTGATGACGTATGTTTGTTAAACAAACACTTGGAAGAGCACAAAACGGACCACTGCTGCCGGCTTTGTCCAGCCACCAGGTTCGAGCAATGGCCACAGCTGCTAGCTCACCGAATACTGCATACTGCCAAGTATCAGCAGTGCCACCTGTGTGACCAGAAATTTAGATCACATACCAACCTGGAGTTCCATTATTGGAAGGTCCACTGTGGTGTAAATAATGCTGCCTTGGCATGCAGCCAATGTCCAAGAAAGTTTTCTAGTCCAAAAAAGTTATCAAAGCATATATGGCGCTCACATTCTTCAAGGAAGTATGTTTGCGATATTTGTTCCAAAGTATATAATAACAAGCAAAAGCTGAAAGTACATATAACAGGGCATGGCGATGTGCGTCGCTACGTTTGCGATTTGTGTGGATATAGTAGTAAATTTCTTACTGGCCTTCGTGCTCACACCGTAAGAAAACATTCGCCTCATAAATGCATTTGTAAAATTTGCGAAAGAGCTTTTGCTGATCCTGAGAAAATGGCGAAGCATGTCTGCACAGAGATCAGCAATATATGTCCTGTTTGCGGAAAGCATTTACGAAAAGGGTTGGCGCGGCACATGGCGACGCACGGCGCGGAGCGGCGGTTCGCGTGCTCGCGCTGCCCCGCCGCGTACCGCAGCCGCTCCTCTCTCAAAGTGCACCTGGACAAGCATGACAACAACCCTACGCAGCAGTGCGAGGTGTGCCACGCGCGCTTCTACTCGCCCTCCGTGCTTATCAAGCATCGCCGCGTGCATACAGGAGAGAAGCCGTATGCTTGCAAAAAGTGCCACATGCGGTTTACTGGAAACAACAACCTAAAGGTCCACATGAAGGTGCATGGCGAGATGCTAATCGTCAAGAAGAACGCTGAGGCCGAGCCGCTCTTAGACGTCCCTAAACCTGAGTAG
- Protein Sequence
- MNLCRACLSSDVELNTIDASFVYDYNLLTNLNVQLMDGKSQCFCQTCVETVNYFIEFRNKCTSSELTLQQTCSSNAVKMEDQVQDDMQMIIKGEIKHENDDSSYEAEFDAKPEYDDEYEFKLEKKYDQPEKKPKKRLKKKKTVKINKKIKNEKPHNLYENYIKILGDNPACGLCGKVFDDVCLLNKHLEEHKTDHCCRLCPATRFEQWPQLLAHRILHTAKYQQCHLCDQKFRSHTNLEFHYWKVHCGVNNAALACSQCPRKFSSPKKLSKHIWRSHSSRKYVCDICSKVYNNKQKLKVHITGHGDVRRYVCDLCGYSSKFLTGLRAHTVRKHSPHKCICKICERAFADPEKMAKHVCTEISNICPVCGKHLRKGLARHMATHGAERRFACSRCPAAYRSRSSLKVHLDKHDNNPTQQCEVCHARFYSPSVLIKHRRVHTGEKPYACKKCHMRFTGNNNLKVHMKVHGEMLIVKKNAEAEPLLDVPKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00155606; iTF_00325775;
- 90% Identity
- -
- 80% Identity
- -