Basic Information

Insect: Archips xylosteana
Gene Symbol: Clamp
Assembly: GCA_947563465.1
Location: OX387343.1:10582176-10597918[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4e-05 0.0029 18.7 0.7 1 23 127 149 127 149 0.99

2 7 5.8e-05 0.0042 18.2 2.3 1 23 334 356 334 356 0.97

3 7 3e-05 0.0022 19.1 0.1 1 23 362 384 362 384 0.98

4 7 3.1e-06 0.00022 22.2 3.0 1 23 390 412 390 412 0.99

5 7 2.5e-06 0.00018 22.5 0.4 1 23 418 440 418 440 0.98

6 7 6.4e-06 0.00047 21.2 0.7 1 23 446 468 446 468 0.98

7 7 0.00012 0.0085 17.3 0.2 1 23 474 496 474 496 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4e-05	0.0029	18.7	0.7	1	23	127	149	127	149	0.99
2	7	5.8e-05	0.0042	18.2	2.3	1	23	334	356	334	356	0.97
3	7	3e-05	0.0022	19.1	0.1	1	23	362	384	362	384	0.98
4	7	3.1e-06	0.00022	22.2	3.0	1	23	390	412	390	412	0.99
5	7	2.5e-06	0.00018	22.5	0.4	1	23	418	440	418	440	0.98
6	7	6.4e-06	0.00047	21.2	0.7	1	23	446	468	446	468	0.98
7	7	0.00012	0.0085	17.3	0.2	1	23	474	496	474	496	0.96

Sequence Information

Coding Sequence: ATGTTCACAACGAATGCCGTGCAAACCGGCTCGGTTCCAACGCTGCAGTACCAAGAGCACCCGACGCCGAAGTCACAAGGCAAGAATATAGAGAATGCTCAACAGAAGAACGCGCAACAAACGCAGCAGTCACAACAGCAGCAGCAGGAGTTTCCTACATTCTGCTACACTACTACTAACGTGAACATGATTGGTAAAATTGGCTCGGGAAACACTAGTGGCTCCAGTGGGGTGTCAGGCGGTGTCAACATTGCCCAACTGACGACCAGTGATGACAAGACATGTTATATAGCACAACCTTTCTCATACAACTATGCCTTGGTCAATCAAATGCAGATTGCTCCGAATGGAATACAAAATTCCATATCGAATATAAGTTTCAAATGTGATGTCTGCGGGCTTATGTTTGGACATCTTACACTACTAAACGCTCATAAAAGGATACATGCTCAGGACTCAGAAGGCAACATAACAGTTGTAGCAACGGGTGTGAGCGGCGGCAATGAGGTCTCCATGCCTCCTCACATACAAATTCTGTCTTCGGACTCCACTGAGCAACAACAACATCATGTGCAGTTGCAAGATACTAAACCAATCTTGGTGGACAAAGTGCAAAAATGCATTACATGCGGAGGACCAATCACAAGTAACCCTAAAAGAAAAGGGCCCAAACTCATACGCTGCGAAAATTGTATCGCGCAAGATTCTGTTGAACAGCAAAGAAACAACCAGATGAATGCTACGCAAATATTCGTCACTTCCGAGGACAACGTGAAGTTCGAAGTGGGCGGCGTGAGCGGAGTGCAGCCAACTTCAGACCCGCTCGCCACTACGCAACCGCAACAACAGACGCAGCAGCAAAAGCCATTACCTGGCCATCATCCAGTGAAAAAAAGAAACTTGGCATCAGTAACAAAATGTCAAAACTGCAACGGTTCAGGAATCATATTTGTAGGCGGCAACAAGAATAAACTTAATCAGACTAATACAGATAAGCCATTCCACTGCAATATATGCGGAGGCTCCTTCTCAAGATACTCATCGCTGTGGTCGCACAAGAAACTGCACTCTGGCGAGAAAAACTTCAAATGTGGTATATGTGGCATTGCTTTTGCGAAAGCCGTGTATCTTAAAAACCATTCGAGAATACACACGGGAGAAAAACCGTATAGGTGCAACACATGTGGTATGCAGTTTTCACAGTCGCCACATTTGAAAAACCACGAACGAACGCATTCCGGGGAGAAACCGTACGTGTGCGAGGTGTGTGACAAGGGCTTCGCAAGACACGCCACTTTATGGAATCATCGTCGTATCCACACAGGAGAGAAGCCGTACAAATGCGACACTTGCGGTTCTGCGTTTAGTCAAGCAGCTCACTTGAAAAATCACGCTAAAGTACATTCGGGAGAGAAGCCCTTCAAATGTGACATATGCACGGCCGCGTTCGCTGATCGTTTCGCCTTGAAAAGGCATAGAGGAATCCATGATAAATATGGTCAGACTGCACCTCTCCCATCAAGAATACAACAAGACCAAGCCGAACAGGCTTCGCAGCAAACTGATCAACAGAACACTCAGCCAGCGGTCGAAGTAGAGTTACATGGCGACCAAACCCTCTGA
Protein Sequence: MFTTNAVQTGSVPTLQYQEHPTPKSQGKNIENAQQKNAQQTQQSQQQQQEFPTFCYTTTNVNMIGKIGSGNTSGSSGVSGGVNIAQLTTSDDKTCYIAQPFSYNYALVNQMQIAPNGIQNSISNISFKCDVCGLMFGHLTLLNAHKRIHAQDSEGNITVVATGVSGGNEVSMPPHIQILSSDSTEQQQHHVQLQDTKPILVDKVQKCITCGGPITSNPKRKGPKLIRCENCIAQDSVEQQRNNQMNATQIFVTSEDNVKFEVGGVSGVQPTSDPLATTQPQQQTQQQKPLPGHHPVKKRNLASVTKCQNCNGSGIIFVGGNKNKLNQTNTDKPFHCNICGGSFSRYSSLWSHKKLHSGEKNFKCGICGIAFAKAVYLKNHSRIHTGEKPYRCNTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDTCGSAFSQAAHLKNHAKVHSGEKPFKCDICTAAFADRFALKRHRGIHDKYGQTAPLPSRIQQDQAEQASQQTDQQNTQPAVEVELHGDQTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417101;
90% Identity: iTF_00680925;
80% Identity: iTF_00155587;