Axyl011780.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Archips xylosteana
Gene Symbol
-
Assembly
GCA_947563465.1
Location
OX387372.1:1696478-1698157[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.65 48 5.5 2.7 2 23 207 229 204 229 0.89
2 10 9.8e-05 0.0071 17.5 0.4 1 23 235 257 235 257 0.99
3 10 0.077 5.6 8.4 9.8 1 23 263 286 263 286 0.93
4 10 0.0021 0.15 13.3 1.0 2 20 293 311 292 313 0.93
5 10 3.6e-06 0.00026 22.0 3.7 2 23 332 353 331 353 0.96
6 10 1.2e-06 8.5e-05 23.6 3.2 1 23 360 382 360 382 0.98
7 10 0.00069 0.051 14.8 0.5 1 23 388 410 388 410 0.97
8 10 8.8e-06 0.00064 20.8 2.1 1 23 416 438 416 438 0.96
9 10 7e-05 0.0051 18.0 2.4 1 23 444 466 444 466 0.98
10 10 0.0004 0.029 15.6 4.7 1 23 472 495 472 495 0.97

Sequence Information

Coding Sequence
ATGTCGGACCAAGAAGAGACATACTGCCGCCTGTGTGCGGAAACAACCCCTCTAACACAGCTAATATCGGCCGAAGACGACGTCGCGATCAGTTCGAAAGTAAGCACAAAAATGCTGTGGATAAACATCGATGTTTCGTCTAGTATCCTGCCGACAACTATTTGCTTCTCGTGTTTCGACTTATTGGAGAAAACCTGGACATTTTTGCACAATGTGCGTACAGCTCAGGCTCGGTTGGCATCCATATTTAGAAAGAAAACAAACGACAACCGCTCCTCACCACTTTTGCTCGATACGAAACCTCCCGACGACTCAGATATTGGAAAGCCGGTGGACAAGAACTGGGATGAGTTTCAAACAACGAAACAAGAAGTGAAAGAGGAGAATAATGAGCATTTAGAGAGTTTTACCACGGTTGACGCTAATACATTACTTGAAATCAATTTACAAGTGAAAACTGAACGTATAACAGATGATGAACAGTTTAATGACTCTTTAGCTCACTCTGACCGCTTCAGCAGCGACGACGACGTACCTTTATCAGGTAAAAACAAAGTAAAAAGAGAATCTAAACTCACTATCAACAATTTGGACCTTACCTGGGATGACTATATGTGTCGTTGTGCTATATGTGATGCTCAATGCAAAAACATTGAATCCTTAAGACTGCATGCACTGCACATACACACGTGCTGCTGTGTATTCAAGTGTTCCGACTGCGGCAAAGTTATCGCCAGCTACAGATCCTTCGTAAACCATGTCCGTATGCATGTGAAATCACTTCGACACTGCTGCGAATACTGCAACAACAGATTCTCATCGTTAACCCATTTAAAAAATCACATAACACACAGTCATAGGCACTCATACCTAACAACCTGCCACACCTGCGGTTGTAACTTCGAAACGCAAGAACTATTGCAAGATCATGTATTAATATACTCTAAAGTGCAAAAAAAGCACCGTAAACGGGACGAATTAGACGGAGAGTTGAAGTGCGAACATTGTAATAAAGAATTTAAATCTCGTAGCAACCTCCAACAGCATAAATTAGTCCACACGGAGCGCAATAGGGAGTTTTCATGCCATGTGTGCGGAAAAATGTTTTTTACTAAAGGTACTTTAAGTACTCACATGATGACCCATGAGGATACTAAACCGCACAAATGCGAGTTCTGCCCGATGGCTTTCCGAGCTCGTGGAAACCTCTTATCTCATATAAGTCTTCATTCCGGGGCGAAACCATTTGTCTGTGAACAGTGTGGGAAGAGTTTCAGAGTCAAGCGACATTTGAAATCCCATTCGATAGTCCATACGGACTTGATGCCGTATGTTTGTCAATACTGTAATAAAGCATTCCGTTTTAAGACGAGACTTAATCTTCATGTAAGACAGCATACAGGTGCTAAACCATACAACTGCTTTTTCTGTCAAAGAGACTTTACAAACGGATCCAATTTCAAGAAGCATATGAAACGAAGACACAATATTGATACGTCTAAGAAGAAATACAATAATATTGTTAGTAAGGAAGAAGTTGGTCATGGTAATATTGTTAGCAAAAGTGAAATTAGTCAGATTGCTCAGATTGGTCACAGTAATAACGTTAGCAAAAATGAAATTGGTCAGATTTCTCAAATTGGCCCCATCGGTCAGATTGGTAGCCAAGCATTAACTTAA
Protein Sequence
MSDQEETYCRLCAETTPLTQLISAEDDVAISSKVSTKMLWINIDVSSSILPTTICFSCFDLLEKTWTFLHNVRTAQARLASIFRKKTNDNRSSPLLLDTKPPDDSDIGKPVDKNWDEFQTTKQEVKEENNEHLESFTTVDANTLLEINLQVKTERITDDEQFNDSLAHSDRFSSDDDVPLSGKNKVKRESKLTINNLDLTWDDYMCRCAICDAQCKNIESLRLHALHIHTCCCVFKCSDCGKVIASYRSFVNHVRMHVKSLRHCCEYCNNRFSSLTHLKNHITHSHRHSYLTTCHTCGCNFETQELLQDHVLIYSKVQKKHRKRDELDGELKCEHCNKEFKSRSNLQQHKLVHTERNREFSCHVCGKMFFTKGTLSTHMMTHEDTKPHKCEFCPMAFRARGNLLSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCQYCNKAFRFKTRLNLHVRQHTGAKPYNCFFCQRDFTNGSNFKKHMKRRHNIDTSKKKYNNIVSKEEVGHGNIVSKSEISQIAQIGHSNNVSKNEIGQISQIGPIGQIGSQALT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01136065; iTF_01135084; iTF_00155568; iTF_00462672; iTF_00325698; iTF_00021586; iTF_00342486;
90% Identity
iTF_00155568;
80% Identity
-