Axyl007156.1
Basic Information
- Insect
- Archips xylosteana
- Gene Symbol
- -
- Assembly
- GCA_947563465.1
- Location
- OX387360.1:3842436-3866976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 1.8 9.9 3.1 1 23 302 324 302 324 0.96 2 12 0.00011 0.0083 17.3 0.4 2 23 332 353 331 353 0.94 3 12 0.086 6.2 8.2 0.8 1 23 357 379 357 379 0.97 4 12 0.00049 0.036 15.3 0.9 1 23 384 407 384 407 0.98 5 12 0.013 0.92 10.9 0.1 1 23 411 434 411 434 0.94 6 12 0.0053 0.39 12.0 0.1 2 21 452 471 452 476 0.92 7 12 0.053 3.8 8.9 0.5 3 23 486 507 486 507 0.94 8 12 0.19 14 7.1 0.3 3 23 527 548 526 548 0.97 9 12 1.2e-05 0.00085 20.4 0.5 1 23 559 581 559 581 0.98 10 12 4.9e-05 0.0036 18.5 2.9 1 23 587 609 587 609 0.99 11 12 0.012 0.9 10.9 2.7 1 23 615 637 615 637 0.98 12 12 5.8e-05 0.0043 18.2 0.2 1 23 643 666 643 666 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACGTGAGAGTGTGTCGTATATGCCTCGTCGTGGGTGTAAAGATGCACAACTTGCATTCATATCCATTGAATGGTTACTTTGAAGCTCTTATTGGAATCAATCCTCTAAGCATGATGGAGTTGCCTCCTTATGGGTGTTACGAGTGCACTGCATTGGTGGTCAAGCTGTATCACTTCCGGGAACGCTGCCTCGTTGGACAGACTGAGCTGTGTTCGCTACTACAAGCTACGGGAAAAATCACACTTGAAACCTTGAAACGTGTCAACCGTGAACAGTTAAAACTAACTTCCAACTTGATTATACAACAAAACAATAAAATATATGATATTAATGAAGATGACACATCCGACGTAAAGTTAGAAGAACCGAAAGCAGATGTACCCGCCAATTATATGATTGAAGTAGGTTGCATAAAAGAAGAAGATTGTAATTACGATTATGGAGACGCAAATTGTGATGACTTTCGATTAGACTCGGTATCTAGTGATGATGAGCCACTGGCGCTGTGCAAGAGTGAGAAGAAGAAGAAATCTGATAAGAGACAGGGGAAGAAAGGAAAGAAGGGGAAAGATGCTCCTTCGGAAGAAGCCAGCTTGGATTGTGATGAGTTGCAAGGAATCGAGTCACTACCCAACGCAGTAGCTCTAACCGTAAGTGAAGAAATGCCAGAAAAAACTCCAAAGCGAAAACGTGGACGGCCGCGACTGACGATAACGAAAGACACACAGAAAGCGGCAGAAGTCAAACAGAAAACCAGACGCACGAAGAATACTGGAGGCGTTGTGGCTGAGGATATTGATTTGGAGGAGTACGTCACTATTGTTAAATTGACGCCAGCAGAGCAGTTAGAAGAAATAAACAAGCGTCAGCAGTCGTCAAACTATCTGAACGCCCCGTTCCAGTGTAACCTGTGCTTCAAAGGGTTCATAGACACGCATGCGTGGAAGCACCATGTGGGGAAACATGACCTGAGCGCAGGCGAGGTCGAGTGCCCAATCTGCAAATTCCGGTTCCGGTCGAAACGTGCGCTTCAAAAACACGCCGCCAATCACGAGAAGAAATACGCCTGCAAGTCTTGCCCGTACATCTCTAAAACCACAACGCAAGCTAAACAGCATCAGAGGTGGCACAAAGGAGTAACATACAAGTGCCAATATTGCGATGAGGTCTCCACTAAATGGACGTCCTACCTAAGCCACGTGCGAATCAAGCATCCTTCGGAGTTCATTTGCGGGGTTTGCGGGTACTCCTACGTCAGCAAATTGGGACTTGCCATGCACAAAACTATGATGCATAAAGATCTTGTAGAAAAGACGGAGCCAGAAGGCGAGCAAGAGCCCGGGCCTTACTGCCAGGAGTGCGACGTGCAGTTCGTTTCGTCTGAGGCGTGGAAACGGCACATGGTCACTTCCGCCAAGCACGCGCCAGTCAACGACTTCAAGCATGGTTGTCGCGCGTGCGGCAGCATATTCGCGAGCGCCGAGGAACTCCGCTTACACCACCGGTCCGAGCACGCGCGTCGCCGACCCAAGAACTACGGCAAGAAGCGGGACGGCGCATGGCCGGCCGCCTGCGAACACTGCAACGAGGAGATCCCGAACGCGCGCGAGTACTGGACGCATTTCCGCCGCGTGCATCCCGACAAGACTTATCCCATACAGAAGAACTACATCTGCGATATATGCGGGAAGAGTTTCCGGGGCAACGCGTTCCTAGTATACCACAAGCGGACGCACTTCGAGGAGCGCGCGTACAAGTGCGTTCAGTGTCCCAAAGCGTTCCACAACCGGACCAACCTACAAATGCACGAGAAGACGCATTCCGACGTGCGGCCGTATCCCTGCACCGTATGCTTTAAGGCGTTCAAATGCAAAGGCGCGCTTGATCGACACTTCAGGAGTCATACTGGTGTCAAGCCGTACGAGTGTGAAGTTTGCGGCAAGGCGTTTGGTCAGTCCAACAGTAGGAAACTTCACGTTAGAACTGTGCATTTGAAACAACCCGCGCCTTACGTCAGCCGGGCTAGGAAACGCCGTCCGCTGGACTAA
- Protein Sequence
- MEDVRVCRICLVVGVKMHNLHSYPLNGYFEALIGINPLSMMELPPYGCYECTALVVKLYHFRERCLVGQTELCSLLQATGKITLETLKRVNREQLKLTSNLIIQQNNKIYDINEDDTSDVKLEEPKADVPANYMIEVGCIKEEDCNYDYGDANCDDFRLDSVSSDDEPLALCKSEKKKKSDKRQGKKGKKGKDAPSEEASLDCDELQGIESLPNAVALTVSEEMPEKTPKRKRGRPRLTITKDTQKAAEVKQKTRRTKNTGGVVAEDIDLEEYVTIVKLTPAEQLEEINKRQQSSNYLNAPFQCNLCFKGFIDTHAWKHHVGKHDLSAGEVECPICKFRFRSKRALQKHAANHEKKYACKSCPYISKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSYVSKLGLAMHKTMMHKDLVEKTEPEGEQEPGPYCQECDVQFVSSEAWKRHMVTSAKHAPVNDFKHGCRACGSIFASAEELRLHHRSEHARRRPKNYGKKRDGAWPAACEHCNEEIPNAREYWTHFRRVHPDKTYPIQKNYICDICGKSFRGNAFLVYHKRTHFEERAYKCVQCPKAFHNRTNLQMHEKTHSDVRPYPCTVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRARKRRPLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021592;
- 90% Identity
- iTF_00155584;
- 80% Identity
- -