Basic Information

Insect: Archips xylosteana
Gene Symbol: -
Assembly: GCA_947563465.1
Location: OX387368.1:11093610-11122444[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3 92 4.6 0.1 3 23 106 127 105 127 0.94

2 15 0.00023 0.016 16.4 1.6 1 23 171 193 171 193 0.99

3 15 3.5 2.6e+02 3.2 0.1 1 10 199 208 199 212 0.91

4 15 0.061 4.4 8.7 0.7 1 23 324 346 324 346 0.98

5 15 0.00018 0.013 16.7 0.8 3 23 354 374 353 374 0.98

6 15 1.7e-05 0.0012 19.9 2.8 1 23 380 402 380 402 0.97

7 15 0.00028 0.021 16.1 0.2 1 20 408 427 408 429 0.93

8 15 0.0033 0.24 12.7 1.1 1 23 1220 1242 1220 1242 0.98

9 15 0.047 3.4 9.1 0.7 1 23 1249 1271 1249 1271 0.98

10 15 0.56 41 5.7 0.3 1 23 1275 1298 1275 1298 0.87

11 15 0.0002 0.015 16.5 3.2 1 23 1305 1328 1305 1328 0.95

12 15 0.00026 0.019 16.2 0.1 2 23 1334 1356 1333 1356 0.95

13 15 7.3e-05 0.0053 17.9 0.1 1 23 1369 1391 1369 1391 0.96

14 15 0.00065 0.047 14.9 2.1 1 22 1397 1418 1397 1422 0.94

15 15 0.00094 0.068 14.4 1.7 2 23 1431 1453 1430 1453 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3	92	4.6	0.1	3	23	106	127	105	127	0.94
2	15	0.00023	0.016	16.4	1.6	1	23	171	193	171	193	0.99
3	15	3.5	2.6e+02	3.2	0.1	1	10	199	208	199	212	0.91
4	15	0.061	4.4	8.7	0.7	1	23	324	346	324	346	0.98
5	15	0.00018	0.013	16.7	0.8	3	23	354	374	353	374	0.98
6	15	1.7e-05	0.0012	19.9	2.8	1	23	380	402	380	402	0.97
7	15	0.00028	0.021	16.1	0.2	1	20	408	427	408	429	0.93
8	15	0.0033	0.24	12.7	1.1	1	23	1220	1242	1220	1242	0.98
9	15	0.047	3.4	9.1	0.7	1	23	1249	1271	1249	1271	0.98
10	15	0.56	41	5.7	0.3	1	23	1275	1298	1275	1298	0.87
11	15	0.0002	0.015	16.5	3.2	1	23	1305	1328	1305	1328	0.95
12	15	0.00026	0.019	16.2	0.1	2	23	1334	1356	1333	1356	0.95
13	15	7.3e-05	0.0053	17.9	0.1	1	23	1369	1391	1369	1391	0.96
14	15	0.00065	0.047	14.9	2.1	1	22	1397	1418	1397	1422	0.94
15	15	0.00094	0.068	14.4	1.7	2	23	1431	1453	1430	1453	0.96

Sequence Information

Coding Sequence: ATGGAAGATTTCAATTTAGAACAAGGCATAGATTATGATTCAGAAGATGAATTACCTCTTGTAGATATAAAAAGGGAAAATAATGAAGAAAACAAAACAGGAATTGAAATGTTTATCAATGATTTCAAATTTAAATGCCTTACTTGTTTTGATAAGTTTGAAAATCAGTTGGTATTAGTTAATCATTATAAAGATGTTCACAAGAGTGAGGTGAAAAACAAACACAGTTACACTTTAGTTAAGGATGGTCGAACATATAAAACAGTTTCCGAGATCATCAGGCATGGCAGAGCTCATGATGGTCCAAAGGTGGCTTGTTCATTTGGGTGTGGTTTTGCTTCTGTGTATTCTGGAGCACTGAAGACCCATGAAGATCGACACAGGCAAGAATACAAGAGCCATGTTGTAGCTAGCCGCTGCATCACGAATGGGCCGGCTCGTCCGGGGCAGTACCACCCTCTCACAGAACACCGGCGTGAAGCAGCAGTAATCCTGCTTGCGTTTCGTACGTATAAATGCGAGACCTGCAATAAGAGTTTCCAAGTAAAGACATGGTATGAACAGCATCAGAACGTACACAAGGGCATCAAACCTTTTGTGTGCCAAATATGTGGCCTGGCATTCCATATGGATAGTGATGATGATTATGATGATGATGGTGATGGTGATGACGATGATGTTGATGATGATGTTGATGATGATCATGATGGTGATGATGATGATGGTGGTGATGGTGATGCATGTTTGAGAAAAACTCTATACAAGCCTTGGCCACGAACAGGGATTGCCGGCCTCGTATCTTTAGATGGCCTCGTTAACACTCGGCCATCTATAACTACTCGGCCGGCAATCCCCTATTTCGCGGCCGCTGCAGTAATGTACTATTACAAGCTTTTATTTACCTTGCAGCGTTCATACTTGACGTCACATAGGAGCTCTGTTCATCCCAATGCGTCTCCATTAAACCGATACGTCTGCGTCCAGTGCTCCAAGCCTTGTGGGACTATGAAAGCTCTCACTCTACATTTAAAGGAGCACGGAATAACGTCGAGTTTGCTTTGCGACTTGTGCGGCAAATCGGTGTCAAGTACAGAACAGCTCAAGAAACACAGACTCACACATTTGGGCATCAAGCCCTTTGCTTGCAAATCGTGCGACAAGACCTTTTCAAAGAAGTTCAACCTGAAGCTGCATCAGATCACGCACACAGGCGAACGTGCGCATGCGTGCGACTCGTGCGGCAAACAGTACACACAGAGGAGCGCGTTGCTAAGACACATGGAGGAGTTATTTTTATGCTACCGCTGCAAGAGAGCCTTGCAACACGCAGAAATGTTCATACAAAATGTCCAGAACAACCAAATACTTTTGGAAAACCAGCATAGTTTGACAGAATCTGACATGAGCTTAGCGCGAACACAAATTCAACTCCCATACCAGCTCACCCAAACAATCCCTTACCACGTGGATTATAAAGCAGAAGAATCAAACGTTGAAGAGTCTGTCTCTATCGTGAATAGTAATAAGGATGTGAAGGTCAAGCAGGAGATGAAGGAGGAAAGCGAAGGCTCGGATGATGGAGATGATGACAATGATGTGTCTGAATATTTGCCTAGCCCAGAGAGATTTCAAAATTTACAGCGCAGTAAGAGTTCTTCAAGCATTGGAGGAGACTCAGATTATTTAGAAAAAGCCTCTCAAAATATAATAAGCACTCCATCAAATATATCGAACATTTCCCTCGTATTGAATTCTGTGAATTTTATAGCATCACCTTCAATCGTTTATCAACAACTTAAGGGAACTCCAGAAACAAACACTAATTGTTCTATTGATTTGACACCAACCTCAACACATGAATGTATAGGACCCTCTCATAAGAATTCAAAACGATGTCTGAGTCAAATATTCCTTAACGACGCTCAGCCGTCAACATCGTCTAATTCTATAGGTATTTTTGATAACCGAGAACAGGAACTAGCGTCGCCTTTTGACGGTAATGATTTAGATGAAACATTACAGAGGAATAGTAATTGTAGCAGTGTACTCTCAGATAAAACGATTATCGGTAATTCAAGCATGACATATAGACCTGCCCACCAGAGTCCTGGCCCTCAGAGTCCTCCCTGTCACAGTTTTGGCAATGAGAGCCCGGTTCACCAAAGTCCTTTCCGTTGCAGTCCTGCCCATCAGAGTTCCGATCAGAGTTCAGCCCATCAAACTCTTGTCAATCATATTCCTGAGCAGTACACTCCCTACCATCAAAGTCCTGACCCTCAGAGATCTGCCCGTCACAGTCTTGACGGTGAGAGCTTGGTTCACCAAAGTCCTGTTCGTCGCAGTTCTGCCCAACAGAGTCCCGATCAGAGTCCAGTCCATCAAACTCCTGCCCATCATAGTCCAGAGCAGTACTCTCCCAGCCAACAGTGTCCTAACCCTCAGACTCCTGCCTGTCACAGTATTGACAATGAGAGTCCGTTTCACCAAAGTCCTGTCCGTCGCAGTCCTGCCCATCAGAGTCCCGATTACAGTCCACATCAAACTCTTGCCCATCATAGTCTTGAGCAGTACACTCCCAGCCACCAAAGTCCTGAACTTCAGAGTCCTATCCATCACAGTCTTGACAACGATGGCCAGAGTGAGGGAGACTCTGTGCACGCCAACATTGAAAGAGAATTAAAAAATAGAGTCGTGTACACCCCGGACCAGATGTACGCAATCATTATTAACGCGAAAGTCAACGGAGAAAAGTACAACGTTAAAGAAATGCTTCAAAAGGAGTTTTATAACATAAAAGAACTAATAAATAATAAAAATTGGGTCAAAAATGAGGTAGGGCAAAAAGTATCATGGACACAGATAATGGAAGTGAGAGTCGCTTGCTCACAGCCCTCAATTTTACAGTATAAATATGATTTTGATTCTGGATATTCTCTAATGAACATAGAACCTGTCCAAAAAACAAAAAGCAAGCGGGGAACCAAGACAAACAGCAGTACCTTAGTCAACCCAAATCCTGCCTCCGATTTTGAACATGCCACTCAGAACATATTGAGAACTCCGTCAACTATTTCAAATATTTCGCTTATTTTGAATGTAGCAGATTTCATAGCATCACCTTCACCGACAGTCGGTGGAAATAACAAGATTTGTACTTCTGATTTGACAACAACTTCAAAGCATGCGTTGAATGAATCTTCATTGCAGCGGTCATCAAAACGATGTCTAAATCAAATATTCCAGAACTGCAACCAGCCCTCGACCTTTGATGCTTACGAAGGTGACAAGCACAAAGAACAAACAAGGACCCTTGATGCTACTGATTTGGACGAAACTCTACAACCAGAAAATAATACAGAAAGTATCTTAACGGACGAAACGATGATCAGCAATGAAAGCACAACAACGATTCAAAATTATCAAGACAACTATGTGAAAGATGAAGATTTCCCACTGAAAGATTTGCTGAAAAAGGAAATGGTCGTAGAAGAGATAGATCCCAAAAGTCTGAAACGTAGCCTGAAAAAAAGGAAATACAAAAAGCACAAAAAGCAAACGCAAGAAGCACACATTATAGAGACAATCTACATATCCCGTGAGCAGTGCTTGGAGGAGCGAGAGAGACAGAAGCTGGAACGGCGATATGTCGTCTCAACATACAAATGCGAAGATTGTGTCAAAGGATTTAATTTTAAAGAGAGTTATGACAAGCATGTAGAGAAACATAGTGTGAGCAACGGTGATTACGAATGTGATATATGCAAATTAAGAATGAGTACAGAAGAAAAACTGATCAGCCACAAGAGATATCATGAAGTCCGCTACCGCTGTCCCGTGTGTGGGCTGACCCGCATCAGCCGCCTGACAGTCAAAGACCACTACTCAGCGTTCCACACCACCAACCAATACAAGCACAGCTGTCCGCATTGCGCTAAAAGCTTCaaACGGCAAGTGTCATGGCGGAAGCACATATCGAACGTACACTCACTCAAGCGCGTGACCTGTGGGTATTGCAACAAGAGTTACGCCAACAAAGACGTGCTCAAAGCACATTTGATAGTTCAGCATCCGAAAGAAGTGTCAGCGGGTGAGATAAAGAAAACGCACGTTTGTCCAGACTGCGGGATGGCGTTCAAGGCGCCCTCCCAACTTAGGATACACAGCATCAAGCACTCGCTCAACAAAGACTACTACTGCGTTGAGTGCGACAAGAGTTTTAAATCGGCATCCATACTGAAACATCATTTGAAAACTACCTCGACGCACGTCAGTTACGTGGAGCTACCTCTACAGTGTGAACACTGCGACAAGCGGTTCGCGATCCGTCGCGACTTAGACAGACACACAAACAGGGTGCATTTGAACATTAAGCCATTCCAATGCGACCAGTGTGAAAAGGTAATAAAAATGGTCTTCTGA
Protein Sequence: MEDFNLEQGIDYDSEDELPLVDIKRENNEENKTGIEMFINDFKFKCLTCFDKFENQLVLVNHYKDVHKSEVKNKHSYTLVKDGRTYKTVSEIIRHGRAHDGPKVACSFGCGFASVYSGALKTHEDRHRQEYKSHVVASRCITNGPARPGQYHPLTEHRREAAVILLAFRTYKCETCNKSFQVKTWYEQHQNVHKGIKPFVCQICGLAFHMDSDDDYDDDGDGDDDDVDDDVDDDHDGDDDDGGDGDACLRKTLYKPWPRTGIAGLVSLDGLVNTRPSITTRPAIPYFAAAAVMYYYKLLFTLQRSYLTSHRSSVHPNASPLNRYVCVQCSKPCGTMKALTLHLKEHGITSSLLCDLCGKSVSSTEQLKKHRLTHLGIKPFACKSCDKTFSKKFNLKLHQITHTGERAHACDSCGKQYTQRSALLRHMEELFLCYRCKRALQHAEMFIQNVQNNQILLENQHSLTESDMSLARTQIQLPYQLTQTIPYHVDYKAEESNVEESVSIVNSNKDVKVKQEMKEESEGSDDGDDDNDVSEYLPSPERFQNLQRSKSSSSIGGDSDYLEKASQNIISTPSNISNISLVLNSVNFIASPSIVYQQLKGTPETNTNCSIDLTPTSTHECIGPSHKNSKRCLSQIFLNDAQPSTSSNSIGIFDNREQELASPFDGNDLDETLQRNSNCSSVLSDKTIIGNSSMTYRPAHQSPGPQSPPCHSFGNESPVHQSPFRCSPAHQSSDQSSAHQTLVNHIPEQYTPYHQSPDPQRSARHSLDGESLVHQSPVRRSSAQQSPDQSPVHQTPAHHSPEQYSPSQQCPNPQTPACHSIDNESPFHQSPVRRSPAHQSPDYSPHQTLAHHSLEQYTPSHQSPELQSPIHHSLDNDGQSEGDSVHANIERELKNRVVYTPDQMYAIIINAKVNGEKYNVKEMLQKEFYNIKELINNKNWVKNEVGQKVSWTQIMEVRVACSQPSILQYKYDFDSGYSLMNIEPVQKTKSKRGTKTNSSTLVNPNPASDFEHATQNILRTPSTISNISLILNVADFIASPSPTVGGNNKICTSDLTTTSKHALNESSLQRSSKRCLNQIFQNCNQPSTFDAYEGDKHKEQTRTLDATDLDETLQPENNTESILTDETMISNESTTTIQNYQDNYVKDEDFPLKDLLKKEMVVEEIDPKSLKRSLKKRKYKKHKKQTQEAHIIETIYISREQCLEERERQKLERRYVVSTYKCEDCVKGFNFKESYDKHVEKHSVSNGDYECDICKLRMSTEEKLISHKRYHEVRYRCPVCGLTRISRLTVKDHYSAFHTTNQYKHSCPHCAKSFKRQVSWRKHISNVHSLKRVTCGYCNKSYANKDVLKAHLIVQHPKEVSAGEIKKTHVCPDCGMAFKAPSQLRIHSIKHSLNKDYYCVECDKSFKSASILKHHLKTTSTHVSYVELPLQCEHCDKRFAIRRDLDRHTNRVHLNIKPFQCDQCEKVIKMVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -